Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c12
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-8|CAC70086.1|  205|Caenorhabditis elegans Hypothetical pr...   147   7e-36
U40951-2|AAG01565.2|  317|Caenorhabditis elegans Hypothetical pr...    31   0.97 
Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    28   6.8  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    28   6.8  
U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine rece...    28   6.8  

>Z71259-8|CAC70086.1|  205|Caenorhabditis elegans Hypothetical
           protein F13G3.11 protein.
          Length = 205

 Score =  147 bits (356), Expect = 7e-36
 Identities = 67/176 (38%), Positives = 102/176 (57%)
 Frame = +1

Query: 76  RYTMSAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVV 255
           R  +S   RV QW  F+R WH+ D   QD       + +YL G HKPI+HP  DCGD VV
Sbjct: 4   RRAVSRFDRVNQWLQFSRQWHVIDANQQDAELLGDKVARYLAGKHKPIFHPETDCGDHVV 63

Query: 256 CINSREIALRGDEWRKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQR 435
             N ++IA+   +W+   Y  +  YP   +   AW++H+ D   I   +VYR++  NL R
Sbjct: 64  VTNCKDIAMHAFDWKHTIYKFNMEYPKSKADIPAWQIHDYDQCRIAFLSVYRSLGNNLLR 123

Query: 436 RHTMQRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEVKNYPKVMEYPE 603
           R  +QRL ++P E + E V +N+ +Q+RQ++ V KR D    EE  N+P+V+++ +
Sbjct: 124 RRHIQRLHLFPDEEMAEFVRKNIGSQLRQVQGVVKRSDEYTAEERANFPRVVKFAD 179


>U40951-2|AAG01565.2|  317|Caenorhabditis elegans Hypothetical
           protein ZK721.3 protein.
          Length = 317

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 37  YFSISL*INI*ALRYTMSAAKRVQQWATFARSWHIFDCKWQDPYESAH 180
           ++SI+  IN   + ++++   R Q W  F     +F+CK +DPY  A+
Sbjct: 7   FYSITHMINP-VIYFSLNKEMRAQLWEAFVDFRKLFNCKKKDPYGFAN 53


>Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical
           protein ZK678.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 315 EISTFPPLVASKSYLSTIY---TDNNISTIVHRMVYGFVHAHQIFFYNVSGFIRILPFAV 145
           +  T+  L+ + SYL+T++   T N +  ++      +    +IF Y   GFI ++ FA 
Sbjct: 63  KFGTWTTLMGTFSYLNTLFIRLTINRVFIVIKPFNSFWFSQPRIFTY--CGFISLMVFAS 120

Query: 144 EYVPTTSKC 118
             +P  S C
Sbjct: 121 LLIPLFSSC 129


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 319 HTGYPGGASWTLAWELHNKDPTM 387
           H  YP G S T+ + LH  DP++
Sbjct: 581 HATYPDGLSGTITYVLHKGDPSL 603


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 319 HTGYPGGASWTLAWELHNKDPTM 387
           H  YP G S T+ + LH  DP++
Sbjct: 725 HATYPDGLSGTITYVLHKGDPSL 747


>U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 1 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -2

Query: 222 VYGFVHAHQIFFYNVSGFIRILPFAVEYVPTTSKCCPLLYSF 97
           V  FV A  +  Y    F    P A  Y+     CC LLYSF
Sbjct: 238 VNNFVMAIILTMYMSKSFKVSYPLATLYLHFAFNCCVLLYSF 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,845,227
Number of Sequences: 27780
Number of extensions: 350528
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)