Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c11
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   0.24 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   1.7  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    24   2.9  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    23   6.7  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    23   8.8  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 159 YVARSESIMRDSDVAFSHSAALGIAQVRRNGNR 61
           Y    ES + D+ +  SH+ A  I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 41   MSTTYIILLPFLLTCAIPSAAECENATSLS 130
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 36  IKCRRLILFCYRFSS 80
           I+CR  + FC+RF S
Sbjct: 66  IQCRDFMFFCWRFQS 80


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 62  LLPFLLTCAIPSAAECENATSLSLMIDSLLATYDRESP 175
           L+     C I     C  A  L  + DSL+  Y+  SP
Sbjct: 371 LISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP 408


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 3   FTRDSFNRSVVIKCRRLILFCYR 71
           F  + FN+   ++  +L++FC R
Sbjct: 122 FVMELFNKEQYLQSSKLLIFCLR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,383
Number of Sequences: 5004
Number of extensions: 13775
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)