Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c11
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 29 0.51
05_07_0356 + 29529422-29529517,29529613-29530200 27 2.7
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 26 4.8
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 25 6.3
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 25 6.3
06_02_0037 - 10856616-10856915,10857527-10860238 25 6.3
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 25 8.4
09_04_0430 + 17502387-17503505 25 8.4
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427 25 8.4
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 29.1 bits (62), Expect = 0.51
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 180 SGGDSRSYVARSESIMRDSDVAFSHSAALGIAQVRRNG 67
S GD + + I + SDV SHSA +G V NG
Sbjct: 339 SFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNG 376
>05_07_0356 + 29529422-29529517,29529613-29530200
Length = 227
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 146 LLATYDRESPPDSXIVVXLTLHLR--HANIRESESTV 250
LL T R +PP I + +LHL H NI + TV
Sbjct: 150 LLRTLSRRAPPVRIIALLESLHLEVLHLNITTMDDTV 186
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 83 CAIPSAAECENATSLSLM--IDSLL-ATYDRESPPDSXIVVXLTLHLRHANIRESES 244
CA+ AEC+ +TS SL +D+L A YD + D L +R++ I + +
Sbjct: 50 CAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRN 106
>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 174 GDSRSYVARSESIMRDSDVAFSH 106
GD +S+VAR+ SI + + +H
Sbjct: 1295 GDQQSFVARASSIKEQGETSLAH 1317
>07_01_0242 +
1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 6 TRDSFNRSVVIKCRRLILFC-YRFSSLVLYLVRQNAKTQHH 125
T D++NR + R+ FC Y F S+VLY +R + + H
Sbjct: 708 TADTWNR-IHRTWNRIHRFCHYHFRSVVLYRIRVQQQYRWH 747
>06_02_0037 - 10856616-10856915,10857527-10860238
Length = 1003
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 56 IILLPFLLTCAIPSAAECENATSLSLMID--SLLATYDRESPPDSXIVVXLTL 208
++L+PFLL + +AA+ + A ++++ D L+ Y S PD + +L
Sbjct: 141 LVLIPFLLQPCVKAAAQLK-AVRVAMVFDLVLLMVAYIAGSCPDRPTTIFASL 192
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 3 FTRDSFNRSVVIKCRRLILFC 65
FT D F + ++++CR L+ C
Sbjct: 115 FTLDQFGQVILLQCRVLVQMC 135
>09_04_0430 + 17502387-17503505
Length = 372
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 124 TVPHDRLAPRNVRSGVSPRLXNRSXPDPAFETC*HS*VRVHRAD 255
+ P R+AP+ + +P + + P P F T S +H+ D
Sbjct: 201 STPPQRVAPQPPATAAAPPIEPVAPPSPTFWTVCMSCCHIHQYD 244
>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
Length = 474
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 138 IMRDSDVAFSHSAALGIAQVRR 73
++RD+D+ FS A G+A V R
Sbjct: 76 VLRDADLLFSAGEAAGVAAVGR 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,549,228
Number of Sequences: 37544
Number of extensions: 104287
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -