Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c11
         (260 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-450|AAF59230.1| 1379|Drosophila melanogaster CG2105-PA,...    27   2.7  
AE013599-449|AAS64900.1| 1397|Drosophila melanogaster CG2105-PB,...    27   2.7  
BT025952-1|ABG02196.1|   93|Drosophila melanogaster IP15265p pro...    27   3.6  
AY113651-1|AAM29656.1| 1019|Drosophila melanogaster SD13650p pro...    27   4.8  
AL021106-10|CAA15944.1| 2422|Drosophila melanogaster EG:63B12.3 ...    27   4.8  
AE014298-281|AAN09063.2| 2431|Drosophila melanogaster CG3848-PD,...    27   4.8  
AE014298-280|AAF45684.2| 2410|Drosophila melanogaster CG3848-PC,...    27   4.8  

>AE013599-450|AAF59230.1| 1379|Drosophila melanogaster CG2105-PA,
           isoform A protein.
          Length = 1379

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 95  SAAECENATSLSLMIDSLLATYDRESPPDSXIVVXLTLHLRHANIRESES 244
           S +  E A+SL+L ++SLL  YD++       V  L L     +I ES S
Sbjct: 28  SRSRSERASSLALPLNSLLDFYDKQQ-EQCKSVTLLPLPSNSGSISESSS 76


>AE013599-449|AAS64900.1| 1397|Drosophila melanogaster CG2105-PB,
           isoform B protein.
          Length = 1397

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 95  SAAECENATSLSLMIDSLLATYDRESPPDSXIVVXLTLHLRHANIRESES 244
           S +  E A+SL+L ++SLL  YD++       V  L L     +I ES S
Sbjct: 28  SRSRSERASSLALPLNSLLDFYDKQQ-EQCKSVTLLPLPSNSGSISESSS 76


>BT025952-1|ABG02196.1|   93|Drosophila melanogaster IP15265p
           protein.
          Length = 93

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 95  SAAECENATSLSLMIDSLLATYDRESPPDSXIVVXLTLHLRHANIRESES 244
           S +  E A+SL+L ++SLL  YD++      + + L L     +I ES S
Sbjct: 28  SRSRSERASSLALPLNSLLDFYDKQQERCKSVTL-LPLPSNSGSISESSS 76


>AY113651-1|AAM29656.1| 1019|Drosophila melanogaster SD13650p
           protein.
          Length = 1019

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 215 SNAGSGXLRFXSRGETPDRTLRGASRS*GTVMLRF 111
           S+AG G L+  SRG    R L G     GTV+ R+
Sbjct: 10  SSAGGGKLKGGSRGWPLSRHLEGLEDCDGTVLGRY 44


>AL021106-10|CAA15944.1| 2422|Drosophila melanogaster EG:63B12.3
            protein.
          Length = 2422

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 215  SNAGSGXLRFXSRGETPDRTLRGASRS*GTVMLRF 111
            S+AG G L+  SRG    R L G     GTV+ R+
Sbjct: 1413 SSAGGGKLKGGSRGWPLSRHLEGLEDCDGTVLGRY 1447


>AE014298-281|AAN09063.2| 2431|Drosophila melanogaster CG3848-PD,
            isoform D protein.
          Length = 2431

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 215  SNAGSGXLRFXSRGETPDRTLRGASRS*GTVMLRF 111
            S+AG G L+  SRG    R L G     GTV+ R+
Sbjct: 1422 SSAGGGKLKGGSRGWPLSRHLEGLEDCDGTVLGRY 1456


>AE014298-280|AAF45684.2| 2410|Drosophila melanogaster CG3848-PC,
            isoform C protein.
          Length = 2410

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 215  SNAGSGXLRFXSRGETPDRTLRGASRS*GTVMLRF 111
            S+AG G L+  SRG    R L G     GTV+ R+
Sbjct: 1401 SSAGGGKLKGGSRGWPLSRHLEGLEDCDGTVLGRY 1435


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,404
Number of Sequences: 53049
Number of extensions: 169299
Number of successful extensions: 309
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 24,988,368
effective HSP length: 65
effective length of database: 21,540,183
effective search space used: 452343843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)