Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c11
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   0.35 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   2.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   3.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   5.8  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    20   5.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   5.8  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 0.35
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 53  YIILLPFLLTCAIPS-AAECENATSLSLMIDSLLAT 157
           Y ILL  L+TC I S +  C   T  S + D ++AT
Sbjct: 3   YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 234 SRMLACLKCRVRXTTIXESGGDSRSYVARSESIMRDSDV 118
           +RMLA L    R +    SGG       RSES++   D+
Sbjct: 21  ARMLALLVSLHRLSIY--SGGSDWRVAGRSESVVIPGDI 57


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 113 NATSLSLMIDSLLATYDRESPPD 181
           N  ++S ++DS   +YD+   P+
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPN 30


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 113 NATSLSLMIDSLLATYDRESPPD 181
           N  ++S ++DS   +YD+   P+
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPN 30


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 26  ISCHKMSTTYIILLPFLLTCAIP 94
           +S HK + T  +++   L C +P
Sbjct: 265 VSDHKAAITVGVIMGVFLICWVP 287


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +1

Query: 70  VSPHLCYT*CGR 105
           + PH+C   CG+
Sbjct: 37  IKPHICRKICGK 48


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 151 RNVRSGVSPRLXNRS 195
           R  R  +SPR+ NRS
Sbjct: 729 RQHRDSLSPRVENRS 743


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,886
Number of Sequences: 438
Number of extensions: 841
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)