Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c09
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    40   4e-04
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    29   0.64 
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   3.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   7.8  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
 Frame = +1

Query: 367 TFAMIKPLPTE--IVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFPFLLD 540
           TF  +KP   +  ++G I+S F   G ++  +K    + + +   Y      P +  L+ 
Sbjct: 6   TFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVG 65

Query: 541 YLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKAEIGSIRALYGTDPVKNCVH 696
           ++    V  +   G+ AV     +LG  +P  +  G+IR  YG D  +N  H
Sbjct: 66  FMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCH 117


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 391 PTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFPFLLDYLTGEM--VY 564
           P  I+  ++   H  GLR+    +  L+   +    R  + DP F   L  +T  +  +Y
Sbjct: 392 PVLIITMLIELLHVGGLRIALSNRDDLSLTPLINFLRKYIRDPRFSETLCIVTSTILDIY 451

Query: 565 GLELVGRDAVLVCIKLLGDK 624
           G  L G   V   I  L +K
Sbjct: 452 GAALGGSVMVENAISKLREK 471


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 302 RRPNILKVQPI*NLSKVTPFTLTLFTNVFRLFKSYISIVSSE 177
           +R  ++ V+PI  L K    + T +  VFR +     IVS +
Sbjct: 330 KRDTVIIVKPIDTLDKAPVLSPTTYDTVFRYYYEICGIVSRQ 371


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 35  SNFELQL*QPNFEILQWKNLTLINILSLANG 127
           S+F+     PNF  L  ++ TLIN +SL +G
Sbjct: 731 SHFKRHSGDPNFLKLYRESFTLINTVSLVSG 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,532
Number of Sequences: 5004
Number of extensions: 54884
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)