Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c09
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835...    54   8e-08
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215...    52   3e-07
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416...    50   2e-06
10_01_0189 + 2097918-2098191,2101711-2102747                           28   6.2  
05_06_0011 - 24841453-24841560,24841650-24841715,24841894-248421...    28   8.1  
01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378...    28   8.1  

>07_03_0445 -
           18281715-18281832,18282274-18282505,18283486-18283534,
           18283733-18283783
          Length = 149

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
 Frame = +1

Query: 358 MQVTFAMIKP--LPTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFPF 531
           M+ +F MIKP  +   ++G I+S F + G  +  MK   +        Y      P FP 
Sbjct: 1   MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60

Query: 532 LLDYLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKAEIGSIRALYGTDPVKNCVH 696
           L++Y+    V  +   G+D V    +++G   P +A  G+IRA Y  +  +N +H
Sbjct: 61  LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIH 115


>12_02_0695 +
           22220054-22220056,22221226-22221276,22221415-22221501,
           22222064-22222144,22222241-22222353,22222482-22222531,
           22222790-22222857
          Length = 150

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
 Frame = +1

Query: 358 MQVTFAMIKP--LPTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFPF 531
           ++ ++ MIKP  +   +VG+I+S F + G  +  +K  +   +     Y+     P FP 
Sbjct: 2   VEQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPG 61

Query: 532 LLDYLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKAEIGSIRALYGTDPVKNCVH 696
           L++Y+T   V  +   G   V    KL+G  +P +AE G+IR        +N VH
Sbjct: 62  LIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVH 116


>05_07_0347 -
           29440541-29440664,29440908-29441020,29441522-29441689,
           29442341-29442391,29442518-29442555,29442885-29442978
          Length = 195

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
 Frame = +1

Query: 355 EMQVTFAMIKP--LPTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFP 528
           EM+ TF  IKP  +   ++ +ILS F   G ++  +K    + E     Y      P F 
Sbjct: 44  EMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFN 103

Query: 529 FLLDYLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKAEIGSIRALYGTDPVKNCVH 696
            L D+L+   V  +   G   +    KL+G  DP+K+E G+IR        +N +H
Sbjct: 104 GLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIH 159


>10_01_0189 + 2097918-2098191,2101711-2102747
          Length = 436

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
 Frame = -2

Query: 413 ILPTISVGRGLIIAKVTCIS-LCNFFRVWSQAKSIIFIRRPNILKVQPI*NLSK---VTP 246
           +LP I  GRG  + K T ++ +CN  RV SQ   I+ I   N+ ++    NLS    V  
Sbjct: 154 VLPIIG-GRG--VGKRTLVTHVCNDERVSSQFNFILHINGANLGQITENGNLSARTLVIE 210

Query: 245 FTLTLFTNVFRLFKSYISIVSSE 177
           F   +  N ++ F S+++ +S E
Sbjct: 211 FFSDVDDNDWKKFYSHVTNLSRE 233


>05_06_0011 -
           24841453-24841560,24841650-24841715,24841894-24842130,
           24842217-24842333,24842742-24842945,24843025-24843093
          Length = 266

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 532 LLDYLTGEMVYGLELVGRDAVLVC 603
           LLD   GE+V  L L G D V VC
Sbjct: 123 LLDLFRGEVVENLNLAGVDRVFVC 146


>01_05_0103 -
           18137176-18137283,18137375-18137440,18137592-18137828,
           18137914-18138159,18138483-18138686,18138781-18138852
          Length = 310

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 532 LLDYLTGEMVYGLELVGRDAVLVC 603
           LLD   GE+V  L L G D V VC
Sbjct: 167 LLDLFKGEVVENLNLAGVDRVFVC 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,155
Number of Sequences: 37544
Number of extensions: 284838
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)