Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c09
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)                  89   3e-18
SB_43840| Best HMM Match : NDK (HMM E-Value=0)                         47   2e-05
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_20055| Best HMM Match : NDK (HMM E-Value=0.65)                      31   0.89 
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  29   4.8  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
          Length = 93

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 36/85 (42%), Positives = 58/85 (68%)
 Frame = +1

Query: 100 DKYSFIGEWYDNQANLKRRFNIFYYPSDDTIEMYDLKSRKTFVKRVKVNGVTLDRFYIGC 279
           ++++F+ EWYD QA L R++ + +Y SD+++EMYD+K+R+ F+KR K +    D FYIG 
Sbjct: 5   ERFAFLAEWYDPQAALTRKYQLLFYASDNSVEMYDIKNRRLFLKRSKCDQYKADDFYIGA 64

Query: 280 TLSILGRLIKIIDFACDHTRKKLHN 354
            ++I  R +KI D+   HT  +L N
Sbjct: 65  IVNIHSRQLKITDYCDKHTTNRLKN 89


>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
 Frame = +1

Query: 367 TFAMIKP--LPTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFPFLLD 540
           TF MIKP  +   ++G+I+S F + G ++  MK  + + +     Y S      +  L  
Sbjct: 641 TFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGLCK 700

Query: 541 YLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKAEIGSIRALYGTDPVKNCVH 696
           Y++   V  +   G   V     +LG+ DP K+  G+IR  +     +N +H
Sbjct: 701 YMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIH 752


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
 Frame = +1

Query: 358  MQVTFAMIKP-LPTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFPFL 534
            MQ T A+IKP +  +    I     E G ++   K+  L+ E  +  Y        F  L
Sbjct: 672  MQSTVAVIKPEVEPDQRELIKQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGL 731

Query: 535  LDYLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKA-EIG--SIRALYGTDPVKNCVH 696
             DY++      + L   DAV     L+G  DP +A E+   SIRA  G D +KN VH
Sbjct: 732  TDYMSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVH 788



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
 Frame = +1

Query: 316 DFACDHT-RKKLHNEMQVTFAMIKPLPTEIVGK-ILSHFHEHGLRVTKMKKSRLTAEDIN 489
           DFA      K+   ++Q T A+I+P       + I+S   E G  +   K+  LT E   
Sbjct: 522 DFAAPTVANKRKKRQLQRTLALIRPDALRSRRESIMSKIQEAGFEIAMSKEMHLTREQAE 581

Query: 490 ILYRSQVTDPTFPFLLDYLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKAE 642
             Y        F  L+  ++   +  L L   DA+     +LG K+  KA+
Sbjct: 582 EFYSEHKDQEFFDTLVTNMSSGPMMALCLAREDAIEGWRGMLGPKEVEKAK 632



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 649 SIRALYGTDPVKNCVH 696
           S+RA+YGTD V N VH
Sbjct: 489 SLRAMYGTDTVMNAVH 504


>SB_20055| Best HMM Match : NDK (HMM E-Value=0.65)
          Length = 150

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 487 NILYRSQVTDPTFPFLLDYLTGEMVYGLELVGRDAVLVCIKLLGDKDP---RKAEIGSIR 657
           N  + S  T+     +++ L       +E+ G+D        +G  DP   R     S+R
Sbjct: 5   NAAHGSDSTESAERSMVEELCSGPCLAVEVRGQDVTKTFRDFVGPADPEIARHLRPKSLR 64

Query: 658 ALYGTDPVKNCVH 696
           A +G D +KN VH
Sbjct: 65  AKFGKDKIKNAVH 77


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 138 LIVIPFANERIFISVRFFHCRISKLGCYSCNSKFETVPL 22
           L+ + +  ER     RF HC   +  C SC+   +T+P+
Sbjct: 501 LVHLSWMQERCKARKRFCHCSKPETPCLSCSKIAQTIPV 539


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +1

Query: 412 ILSHFHEHGLRVTKMKKSRLTAEDINILYRSQVTDPTFPFLLDYLTGEMVYGLELVGRDA 591
           ++S  H H   V  M KSR        L ++++ D T  FL  ++TG  +   E  GR+ 
Sbjct: 526 LISDLHSHNPEVY-MDKSR------ERLDKAEILDLTVNFLKHHITGTRMESFERTGRET 578

Query: 592 VL 597
           VL
Sbjct: 579 VL 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,088,086
Number of Sequences: 59808
Number of extensions: 359923
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)