Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c09
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 4.2
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 4.2
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 4.2
CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical ... 28 5.5
AC006644-2|AAF39837.1| 118|Caenorhabditis elegans Hypothetical ... 28 5.5
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 28 7.3
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 27 9.7
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 118 GEWYDNQANLKRRFNIFYYPSDDTIEMYDLKSRKTFVKRVKVNGV 252
G+W+D K R S +EM D + K KRV V GV
Sbjct: 2996 GQWHDITVEKKNRSLKLIIDSLGPVEMTDCPTPKVMKKRVYVGGV 3040
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 118 GEWYDNQANLKRRFNIFYYPSDDTIEMYDLKSRKTFVKRVKVNGV 252
G+W+D K R S +EM D + K KRV V GV
Sbjct: 2996 GQWHDITVEKKNRSLKLIIDSLGPVEMTDCPTPKVMKKRVYVGGV 3040
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 118 GEWYDNQANLKRRFNIFYYPSDDTIEMYDLKSRKTFVKRVKVNGV 252
G+W+D K R S +EM D + K KRV V GV
Sbjct: 2996 GQWHDITVEKKNRSLKLIIDSLGPVEMTDCPTPKVMKKRVYVGGV 3040
>CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical
protein C50E10.5 protein.
Length = 361
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 112 FIGEWYDNQANLKRRFNIFYYPSDDTIEMYDLKSRKTFVKRVKVNGVTLDRFYIGCTLSI 291
FI W N+ LK+ F + ++IE+Y L +R + V+ +T+ +G +L I
Sbjct: 212 FISNWCYNKNLLKK----FEQHTKESIELYTLAARFQAKENVRAFELTIRIIIVGFSLLI 267
Query: 292 LG 297
+G
Sbjct: 268 IG 269
>AC006644-2|AAF39837.1| 118|Caenorhabditis elegans Hypothetical
protein F55A3.6 protein.
Length = 118
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 478 EDINILYRSQVTDPTFPFLLDYLTGEMVYGLELVGRDAVLVCIKLLGDKDPRKAEIGSIR 657
E +N +++ + P FP L+DY++ V + G D V +LG+ + E+G R
Sbjct: 24 EKMNSMHKDK---PFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILGE----ELEVGEFR 76
Query: 658 ALY 666
+++
Sbjct: 77 SIF 79
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 217 KTFVKRVKVNGVTLDRFYIGCTLSILGRL 303
KT + V + G DRFY+G S +G+L
Sbjct: 136 KTMILSVVLGGFGADRFYLGLWKSAIGKL 164
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 EWYDNQANLKRRFNIFYYPSDDTIEMYDLK-SRKTFVKRVKVNGVTLDR 264
EWYDN+ +N F SD+ +E + + KT R+ V + R
Sbjct: 232 EWYDNEGAFDDEYNPFNKVSDEFVEKREKQWQEKTQKPRLTVKQQAIKR 280
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 EWYDNQANLKRRFNIFYYPSDDTIEMYDLK-SRKTFVKRVKVNGVTLDR 264
EWYDN+ +N F SD+ +E + + KT R+ V + R
Sbjct: 232 EWYDNEGAFDDEYNPFNKVSDEFVEKREKQWQEKTQKPRLTVKQQAIKR 280
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 295 GRLIKIIDFACDHTRKKLHNEMQVTFAMIKPLPTEIVGKILSHFHEHGLRVTKMKKSRLT 474
G+L+ D H K H + IKPL E + E ++V + KK++L
Sbjct: 73 GKLLANDDAIMFHASKTKHENFSESSEAIKPLTAEEKAAKVLEIREK-IKVHQAKKAKLE 131
Query: 475 AED 483
AE+
Sbjct: 132 AEE 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,023
Number of Sequences: 27780
Number of extensions: 295332
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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