Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c09
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.8  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   6.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   6.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   6.4  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 346 LHNEMQVTFAMIKPLPTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRS 504
           +HN +Q  F +IK    +I   I+  F     + +K+K  +   + ++IL+ S
Sbjct: 55  VHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTS 107


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 346 LHNEMQVTFAMIKPLPTEIVGKILSHFHEHGLRVTKMKKSRLTAEDINILYRS 504
           +HN +Q  F +IK    +I   I+  F     + +K+K  +   + ++IL+ S
Sbjct: 38  VHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTS 90


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 377 IAKVTCISLCNFFRVWSQAKSIIFIRRPNILKVQPI 270
           +AKV  +++  +F  W+    I F    N++K+ P+
Sbjct: 276 LAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPL 311


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 65  NFEILQWKNLTLINILSL 118
           N E+L WK +  IN+L L
Sbjct: 102 NDEVLDWKKIFDINLLGL 119


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 377 IAKVTCISLCNFFRVWSQAKSIIFIRRPNILKVQPI 270
           +AKV  +++  +F  W+    I F    N++K+ P+
Sbjct: 26  LAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPL 61


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 395 VGRGLIIAKVTCISLCN 345
           +GR L+I+ V C+ LC+
Sbjct: 8   LGRILLISAVFCVGLCS 24



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 243 YFNSFHKRFSTF*VIHFYSIIRR 175
           Y N++   F T   I FY IIRR
Sbjct: 209 YLNTYKGDFPTETDITFYIIIRR 231


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 108 IFISVRFFHCRISKLGCYSCNSKFETVPLDTV 13
           +FI+  F  C  S  G +  +SK E   +DTV
Sbjct: 7   LFIAAWFIACTHSFPGAHDEDSKEERKNVDTV 38


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 108 IFISVRFFHCRISKLGCYSCNSKFETVPLDTV 13
           +FI+  F  C  S  G +  +SK E   +DTV
Sbjct: 7   LFIAAWFIACTHSFPGAHDEDSKEERKNVDTV 38


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 108 IFISVRFFHCRISKLGCYSCNSKFETVPLDTV 13
           +FI+  F  C  S  G +  +SK E   +DTV
Sbjct: 7   LFIAAWFIACTHSFPGAHDEDSKEERKNVDTV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,754
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)