Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c08
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    24   0.53 
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   3.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   3.7  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   3.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   4.9  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 0.53
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 304 IXEARQLSVNDLNVLIKKGKLHSDTINLKR 215
           I ++ +L  N +N L++KGK   D   LKR
Sbjct: 36  IIKSDRLLKNYVNCLLEKGKCTPDGAELKR 65


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 268 NVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIY 146
           N+L +K  L++  I  K     + TLN+  +KP+++  ++Y
Sbjct: 89  NILFRKKLLNAVKILSKI----DETLNSKPLKPVKIRTKVY 125


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 268 NVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIY 146
           N+L +K  L++  I  K     + TLN+  +KP+++  ++Y
Sbjct: 85  NILFRKKLLNAVKILSKI----DETLNSKPLKPVKIRTKVY 121


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 243 SFPFLISTLRSFTLSW 290
           SF  L +T R+FT SW
Sbjct: 4   SFERLENTWRAFTASW 19


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 226 NLKRKRSRNNTLNNIKMKPLELAREIYSRNPTILXISKNT 107
           +L   ++R +TLN  +MKP   +     +  T+L + +NT
Sbjct: 54  SLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSL-RNT 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,392
Number of Sequences: 336
Number of extensions: 1093
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)