Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c08
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 28 0.48
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 0.85
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 1.5
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 1.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 2.0
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 25 2.6
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 3.4
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 4.5
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 24 6.0
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 7.9
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 24 7.9
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.9 bits (59), Expect = 0.48
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 277 NDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLEL 161
+D NV K D +N+K KR+ N K K LEL
Sbjct: 195 DDNNVRTKSSLNDHDKVNMKEKRNLELAFMNSKRKKLEL 233
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 0.85
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 310 MRIXEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNN-IKMKPLELAREI 149
+++ + RQ K+ K D NLKRKRS ++ +N K K ++AR I
Sbjct: 608 IQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDNEAKEKQAKVARII 662
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 1.5
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 322 LGTGMRIXEARQLSVNDLNVLIKKGKLHSD-TINLKRKRSRN 200
L + +R+ +R S N+ + + K +SD +I+ KR+RSRN
Sbjct: 236 LSSLIRLTRSRARSSNEASYVEKDESSNSDDSISYKRRRSRN 277
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 1.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 184 IKMKPLELAREIYSRNPTI 128
+ +KP EL RE++SR+P +
Sbjct: 866 LNLKPSELERELFSRSPDL 884
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 298 EARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNI 182
+ R+L+V ++K + HS + R++S NN+ +++
Sbjct: 776 DIRRLAVESAQEAVQKAREHSQLFDANRQQSPNNSSSDM 814
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 289 QLSVNDLNVLIKKGKLHSDTINLKRKRSRNN 197
+LSVNDLN + G + +K++ S+N+
Sbjct: 3 KLSVNDLNDFLSPGAVCIKPAQVKKQESKND 33
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 3.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -3
Query: 304 IXEARQLSVNDLNVLIKKGKLHSDTI-------NLKRKRSRNNTLNNIKMKPLELAREI 149
I R+L++ L+K G+LHS + N K ++ R + +N + P L + I
Sbjct: 117 ISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRMNILVCTPGRLLQHI 175
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 4.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 229 INLKRKRSRNN---TLNNIKMKPLELAREIYSRNPTILXISKNTXTPFXDF 86
IN + R + N +LNN + LE+ +NPT + +N T + D+
Sbjct: 583 INFEAPRYKTNIVHSLNNEQKYVLEVKNGTSEKNPTRIVALENGNTKWMDY 633
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 238 SDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNP 134
S + LKRK +T NN K + + +NP
Sbjct: 286 SSALYLKRKAEEESTNNNKWAKKFSTSSNVLDKNP 320
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -3
Query: 307 RIXEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTL 191
+I RQ + + + + KLH I+ +R+R + N +
Sbjct: 69 KIRTRRQAKADRERMELLQAKLHQKVIDRRRRREKRNKM 107
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 23.8 bits (49), Expect = 7.9
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 271 LNVLIKKGKLHSDTI--NLKRKRSRNNTLNNIKMKPLELAREIYSRNP 134
LN + G H D N+ + +++ N+K+ LAREI SR P
Sbjct: 149 LNHIHTNGFFHRDMKPENILISSNSDSSSFNVKIADFGLAREINSRPP 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,061
Number of Sequences: 5004
Number of extensions: 18265
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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