Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c08
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375... 30 0.60
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 30 0.60
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 29 1.4
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 27 5.6
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 27 5.6
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 27 5.6
05_03_0560 + 15468430-15468437,15468971-15469052,15469132-154692... 26 7.4
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 26 9.8
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 26 9.8
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 26 9.8
>06_03_0612 +
22735613-22735643,22735747-22735849,22737154-22737511,
22737592-22738033,22738146-22738189,22738293-22738340
Length = 341
Score = 29.9 bits (64), Expect = 0.60
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 253 KGKLHSDTINLKRKRSRNNTL-NNIKMKPLELAREIYSRNPTILXISKNT 107
KG L ++N +S+ +NI+ KP R Y+RNP I+KNT
Sbjct: 232 KGNLKPRSLNSDAAQSKEAAKKDNIQKKPDAKVRGSYNRNPAKEAITKNT 281
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 29.9 bits (64), Expect = 0.60
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 304 IXEARQLSVNDLNVLIKKGKLHSDTIN-LKRKRSRNNTLNNIKMKPLELAREIYSRNPTI 128
I + SV+DL L+K + +S N L + +++NN + +K + ++LAR+ + I
Sbjct: 106 IARLKDKSVDDLQRLLKDKEAYSAFFNSLDQVKTQNNLRDELKKETVQLARDNLEKEQRI 165
Query: 127 LXI 119
I
Sbjct: 166 SEI 168
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 304 IXEARQLSVNDLNVLIKKGKLHSDTIN-LKRKRSRNNTLNNIKMKPLELAREIYSRNPTI 128
I + SV++L L+K + ++ N L + +++NN + ++ + ++LARE + I
Sbjct: 76 IARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKTQNNLRDELRKETVQLARENLEKEQRI 135
Query: 127 LXI 119
L +
Sbjct: 136 LEL 138
>11_04_0474 + 18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 326 HVRDGYANXRSAPTQRERSQRANQKRK 246
H+ DGY + + A Q+ER++R ++ K
Sbjct: 1056 HLLDGYDDQQKALIQKERARRIKEQHK 1082
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 159 HAKFILETRPFCXYLKTPXRPLXISGGSXK 70
H +F+ ET P YLK +PL GGS +
Sbjct: 484 HGQFV-ETTPSRPYLKIQLQPLRSGGGSAR 512
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 26.6 bits (56), Expect = 5.6
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -3
Query: 349 RGAI--VFCIMLGTGMRIXEARQLSVNDLNVLIKKGKLHSDTINLKRK 212
+GAI VF I + T RI + +L ND N+ + K ++ +NL R+
Sbjct: 212 KGAIFAVFLINMKTYNRIWKCLRLGANDGNLANLQNKSSTNMVNLVRQ 259
>05_03_0560 +
15468430-15468437,15468971-15469052,15469132-15469218,
15469604-15469788,15470047-15470050
Length = 121
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 235 DTINLKRKRSRNNTL---NNIKMKPLELAREIYSRNPTILXISK 113
D IN+ R+ N+ L + I++KP L E+ NP I IS+
Sbjct: 38 DCINMNRQPGFNHPLLKDHTIQLKPSSLLMEMDVENPFISSISE 81
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 241 HSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRN 137
HS KR++ N ++N++ K +L RE+ S N
Sbjct: 611 HSQDKGSGSKRTKRNQMSNLEAKLDDLRRELSSSN 645
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 25.8 bits (54), Expect = 9.8
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = -3
Query: 313 GMRIXEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNP 134
G + E ++ ++ L + K S+ + R N TL IK K +L RE+
Sbjct: 203 GEELEEMKKANIKLQEELADQKKAISEVESEVRGLQSNLTLAEIKSKEAKLQREVQEMEE 262
Query: 133 TILXISKNTXTPFXDFRRLLEES 65
+ + + ++++EES
Sbjct: 263 KLNKLRNGVILVKPEDKKIIEES 285
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 280 VNDLNVLIKKGKLHSDTINLK 218
+ DLN+L+ KG LH + +K
Sbjct: 442 LKDLNILVGKGGLHGNVFRIK 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,047,303
Number of Sequences: 37544
Number of extensions: 121843
Number of successful extensions: 273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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