Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c08
         (354 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.              34   0.11 
AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.        34   0.11 

>AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.
          Length = 1032

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 316 TGMRIXEARQLSV-NDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSR 140
           TG+ I    +  V     +L K+GK H D +++K+      T NN+    + LA  ++  
Sbjct: 95  TGLTILHGEKSHVLGSQPILAKEGKDHLDLLDMKKMEKPQGTSNNVSDSSVSLAAGVHCD 154

Query: 139 NPTI 128
            P+I
Sbjct: 155 RPSI 158


>AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.
          Length = 1013

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 316 TGMRIXEARQLSV-NDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSR 140
           TG+ I    +  V     +L K+GK H D +++K+      T NN+    + LA  ++  
Sbjct: 76  TGLTILHGEKSHVLGSQPILAKEGKDHLDLLDMKKMEKPQGTSNNVSDSSVSLAAGVHCD 135

Query: 139 NPTI 128
            P+I
Sbjct: 136 RPSI 139


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,105,299
Number of Sequences: 237096
Number of extensions: 638389
Number of successful extensions: 1324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)