Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c08
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    27   5.0  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      27   5.0  
Z70682-3|CAE46662.1|  187|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z70682-2|CAA94582.2|  151|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    26   8.7  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    26   8.7  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    26   8.7  
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 352 IRGAIVFCIMLGTGMRIXEARQLSVNDLNVLIKKGKLHSDTINLKRKRSR 203
           I   IVFC+    G+RI E         N      ++H   IN+ +  SR
Sbjct: 180 ITAIIVFCLKTHPGLRIPELAPFGNFSRNHRSTSSRIHPAQINIDKANSR 229


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 246 FPFLISTLRSFTLSWRASXIRIPVPNMMQNTI 341
           FP L+  L+ +  +W  S +RI V N++ N +
Sbjct: 165 FPLLVEVLKLY--NWNESMVRIAVRNILLNIV 194


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 246 FPFLISTLRSFTLSWRASXIRIPVPNMMQNTI 341
           FP L+  L+ +  +W  S +RI V N++ N +
Sbjct: 158 FPLLVEVLKLY--NWNESMVRIAVRNILLNIV 187


>Z70682-3|CAE46662.1|  187|Caenorhabditis elegans Hypothetical
           protein F08G5.3b protein.
          Length = 187

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 59  DARLFXEPPEIXKGRXGVFRYXQNGRVSRINFACQFQRFHFDVVER 196
           + +L  +   I KG      Y ++ R   +NF  QF+ F +D  ER
Sbjct: 94  EKQLMRDEAHIIKGELSKTMYNEDLRSKILNFIDQFECFWYDDNER 139


>Z70682-2|CAA94582.2|  151|Caenorhabditis elegans Hypothetical
           protein F08G5.3a protein.
          Length = 151

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 59  DARLFXEPPEIXKGRXGVFRYXQNGRVSRINFACQFQRFHFDVVER 196
           + +L  +   I KG      Y ++ R   +NF  QF+ F +D  ER
Sbjct: 58  EKQLMRDEAHIIKGELSKTMYNEDLRSKILNFIDQFECFWYDDNER 103


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
            ZK1067.1 protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 349  RGAIVFCIMLGTGMRIXEARQLSVNDL---NVLIKK 251
            R  +++C  + +GM+  E +++   DL   NVL+KK
Sbjct: 985  REQVLYCYQIASGMQYLEKQRVVHRDLATRNVLVKK 1020


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
            protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 349  RGAIVFCIMLGTGMRIXEARQLSVNDL---NVLIKK 251
            R  +++C  + +GM+  E +++   DL   NVL+KK
Sbjct: 985  REQVLYCYQIASGMQYLEKQRVVHRDLATRNVLVKK 1020


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
            kinase protein.
          Length = 1374

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 349  RGAIVFCIMLGTGMRIXEARQLSVNDL---NVLIKK 251
            R  +++C  + +GM+  E +++   DL   NVL+KK
Sbjct: 1036 REQVLYCYQIASGMQYLEKQRVVHRDLATRNVLVKK 1071


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 256 KKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNPTI 128
           KK +  S T   + + SRN+T   +KMK  EL + +  R   +
Sbjct: 67  KKKEKESKTAIFEMEESRNDTEEVMKMKEAELLQGVERRRRNV 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,820,972
Number of Sequences: 27780
Number of extensions: 108014
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)