Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c06
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 31 0.043
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 29 0.30
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 0.93
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 26 1.6
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 2.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 4.9
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 4.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 6.5
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 24 6.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 24 8.6
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 31.5 bits (68), Expect = 0.043
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 2 KPNCIVDXYNVLQFSFQKRN---MNTSVDAVTKLIRLQ-NDVLDMMREVDQYLNSDTPDY 169
K N +VD +V ++R M D T RL+ + + +++ Y NSD DY
Sbjct: 1105 KENVLVDEEDVWSVILKQREKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDY 1164
Query: 170 TIESLNAPGKQFDFLDEMLT 229
T+ ++PG F E ++
Sbjct: 1165 TVNDRSSPGSPFPIETETIS 1184
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.30
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 74 VDAVTKLIRLQNDVLDMMREVDQYL 148
+D + +IRL ND++ +RE++QYL
Sbjct: 254 LDETSSVIRLSNDLVLFLREMNQYL 278
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 0.93
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 71 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIES 181
S+D +L L NDVL V++ LNS PD +++
Sbjct: 391 SMDTTVRLWNLDNDVLHKDNPVEESLNS-PPDQPVDN 426
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 32 VLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTP 163
+L++SF + +++ SV A + L+++VLD+ + + + D P
Sbjct: 569 ILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEP 612
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 139 VHFAHHVQHVVLQTNELCHRVHGRVHVSFLKTKLQHIVRVHYTIR 5
V+ HHVQ + NE+ +V ++ ++ K+Q++ HY R
Sbjct: 934 VYAHHHVQLRIGLDNEISQNNEAKVFLNIIRAKVQNL---HYGFR 975
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 165 SGVSLFRYWSTSRIMSNTSFCKRMSFVTAST 73
SGVS +S +R +S SF +SF+TA +
Sbjct: 976 SGVSETPAFSHARDVSTASFSDAVSFITADS 1006
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 239 IESNAMVF--DETNKNLKFIHNSISICLNRCINLITIKH 349
I S+ MV+ + NK F NS++ L+R N +TI++
Sbjct: 690 ISSSGMVYAWNVVNKTALFTANSLAPILSRVSNNVTIEN 728
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 134 VDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHN 298
+ ++LN++TP +++ N F D L KK E + NL+ N
Sbjct: 69 LQKHLNTETPSFSVSIENPSKPSAAFNDASLGKKSTEHQIDGIRNGSSNLQMEGN 123
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 170 CNRACRCLDIGPLRASCP 117
CN C++ LRA+CP
Sbjct: 180 CNLCYECIESDELRANCP 197
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 SLNA-PGKQFDFLDEMLTKKLIESNAMVFDETNKNLK 286
+LNA PG QF +EM K + E +V + K +K
Sbjct: 370 ALNATPGSQFISAEEMNQKYISEQTQLVEEALTKVMK 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,663
Number of Sequences: 5004
Number of extensions: 25484
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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