Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c01
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    93   5e-20
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    29   0.92 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.92 
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    29   0.92 
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    28   1.6  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   4.9  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   4.9  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    26   4.9  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   6.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   8.6  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
 Frame = +2

Query: 431 EAPKEMTEDI--AEPATP--YHYENFFHDQINAKKRDYSYRVFRKVSRLAADGVYPKALE 598
           + PK    D+    PAT   + Y+ F+ ++++ K RD SYR F  ++RLA +  YP A  
Sbjct: 112 QMPKHYASDLNGVGPATTPRFDYDTFYREELDKKHRDKSYRYFNNINRLAKE--YPLAHL 169

Query: 599 GPENRRVTVWCANDYLGTSRHPTVQDAAVNAIKSYGTGAGGTRNIAGN 742
              N RV VWC+NDYL    H  +++A    I++YG GAGGTRNIAG+
Sbjct: 170 ADPNTRVEVWCSNDYLNMGGHKKIREAMHQCIETYGGGAGGTRNIAGH 217


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 353 IISRGFRSLGNDETKCPFIQQNSIISEAPKEMTEDI 460
           I+SRG  S+ + E+K   I  N + SEAP  +  ++
Sbjct: 736 IVSRGLWSIDSKESKNMHISSNVVASEAPDALAANL 771


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 394 GFVISQRTKSTRYNRAIISVLLHQGR 317
           GF++   T STRYN A+I V L Q R
Sbjct: 335 GFLVG--TSSTRYNEALIDVSLRQSR 358


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 383 NDETKCPFIQQNSIISEAPKEMTEDIAEPATPYHYENFFHDQINAKKRDYS 535
           +DE  C F+   + +    +   +D+ E  + YHYE F   Q+++ K   S
Sbjct: 260 DDENHCEFVFLRNFLM---RTHLQDLIETTSYYHYEKFRFKQLSSLKEQSS 307


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 469 RFRDVLGHFLRSFRNDRVLLNEGAFG 392
           +F  + G+ ++   NDRVL  EG FG
Sbjct: 464 KFYKIWGNEMQEIHNDRVLYREGIFG 489


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 274  VFGIVEPSVREKLWCDPDEAVRKLLPDYISWIS 372
            V   + P + +  +CD  +  RKLL D++S ++
Sbjct: 1598 VLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLN 1630


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 398 IWFRHFPKNEIHEI*SGNNFRTASSGSHHNFSRTLGSTIPKTDKAFYDF 252
           +W  + P N +  + +G+N R  +  +H++    LG T       F+DF
Sbjct: 130 LWLGNLP-NSVQTLNNGSNSRILTVATHYSSPNLLGYTSSDGLCKFWDF 177


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 341 FRTASSGSHHNFSRTLGSTIPKTDKAFYDFYV 246
           +R A + +   F++  G  + +TD++ YDF V
Sbjct: 105 YRCAEAANEKEFAQKFGEKLWETDESRYDFLV 136


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 509 INAKKRDYSYRVFRKVSRLAADGVYPKALEGPENRR 616
           +   KR+++  +FR++ +L  D   P+ L   E R+
Sbjct: 475 VKGNKREFAPVMFRRLKKLGIDKTNPEELTEEEQRK 510


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 395  WFRHFPKNEIHEI*SGNNFRTASSGSHHNFSRTLGS 288
            W+  F  N  + + SGN F T  S  +  F R L +
Sbjct: 1506 WWNLFSNNMSYPLRSGNLFPTLDSSPNKKFGRHLAT 1541


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 368 FRSLGNDETKCPFIQQNSIISEAPKEM-TEDIAEPATPYHYENFFHDQINAKK 523
           + SLG D           +I     ++ T  I+   +PY Y N+F D ++  K
Sbjct: 143 YHSLGFDLETAENTGNKRVIIHTENDLQTVQISNKYSPYFYSNYFWDLLDDSK 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,877
Number of Sequences: 5004
Number of extensions: 66329
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)