Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c01
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868... 44 2e-04
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081... 44 2e-04
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 30 1.7
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801... 29 3.9
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 3.9
10_02_0117 + 5471920-5472401,5472602-5472668,5472956-5473012,547... 29 5.2
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 29 5.2
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743... 28 9.0
08_02_0238 + 14665813-14668798,14669088-14669125 28 9.0
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 9.0
>10_08_0921 +
21586034-21586229,21586464-21586576,21586768-21586875,
21586967-21587205,21587301-21587399,21587448-21587535,
21587617-21587750,21588274-21588362,21588718-21588751,
21588830-21588898,21589216-21589339
Length = 430
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 569 ADGVYPKALEGPENRRVTVWCANDYLGTSRHPTVQDAAVNAIKSYGTGAGGTRNIAG 739
A+G E + ++ ++ NDY+G S HP ++ AAV A + YG G G+ I G
Sbjct: 64 AEGGEGSGQEEKVDEKLILFSGNDYMGLSSHPAIRHAAVKAAEEYGMGPRGSALICG 120
>01_06_0628 +
30707353-30707548,30707846-30707958,30708090-30708197,
30708305-30708543,30708774-30708861,30708942-30709075,
30709285-30709498,30709671-30709759,30710194-30710262,
30710560-30710683
Length = 457
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 569 ADGVYPKALEGPENRRVTVWCANDYLGTSRHPTVQDAAVNAIKSYGTGAGGTRNIAG 739
A+G E + ++ ++ NDY+G S HP ++ AAV A + YG G G+ I G
Sbjct: 64 AEGGEATGQEEEVDEKLILFSGNDYMGLSSHPAIRKAAVKAAQEYGMGPRGSALICG 120
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 605 ENRRVTVWCANDYLGTSRHPTVQDAAVNAIKSYGTGAGGTRNIAG 739
+ + V + + +YLG + + D+ V +++ YG G+ G R+ G
Sbjct: 109 DGKEVVNFASANYLGLIGNEKIIDSCVGSVEKYGVGSCGPRSFYG 153
>03_02_0387 -
8016399-8016575,8016661-8016788,8017073-8017214,
8017301-8017396,8017572-8017712,8017857-8018031,
8018443-8018575,8018661-8018733,8018807-8018900,
8019890-8019981,8020091-8020185,8020267-8020378
Length = 485
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 605 ENRRVTVWCANDYLGTSRHPTVQDAAVNAIKSYGTGAGGTRNIAG 739
+ + V + + +YLG + + D+ V +++ YG G+ G R G
Sbjct: 109 DGKEVINFASANYLGLIGNEKIIDSCVGSLEKYGVGSCGPRGFYG 153
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +2
Query: 359 SRGFRSLGNDETKCPFIQQNSIISEAPKEMTEDIAEPATPYH 484
S+ R G D K N I E+ K + E I EP TPYH
Sbjct: 6 SKKSRDRGRDRVKWNEENLNDI--ESTKPVREKITEPKTPYH 45
>10_02_0117 +
5471920-5472401,5472602-5472668,5472956-5473012,
5473301-5473538,5476504-5476611,5476868-5477111,
5478307-5478550,5478636-5478842
Length = 548
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 622 CLVCQRLLRDVPSPNCAGC 678
CL C++ RD+P C GC
Sbjct: 197 CLACRKCTRDLPPDACKGC 215
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 554 VSRLAADGVYPKALEGPENRRVTVWCANDYLGTSRHP---TVQDAAVNAIKSYGTG 712
++ + G+YPK + + ++T++C L H + A +KS+G G
Sbjct: 474 INDIQGQGLYPKVIYDIDTIKITIYCVYSELAAEVHKGRGRIPVADYKIVKSFGEG 529
>11_02_0020 +
7429898-7430131,7432565-7432669,7434535-7434621,
7435188-7435241,7435338-7435483,7435593-7435719,
7436200-7436208
Length = 253
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 472 RRFRDVLGHFLRSFRNDRVLLNEGAFGFVISQRTKSTRYNRAIISVLLHQG 320
R DV+ FL + +R L A FV+ + R + +LHQG
Sbjct: 48 RPLEDVVADFLARIQPERRLRFGAAINFVLKDKMMLRPAERLVAFTILHQG 98
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 203 SPTSTSFISVLCHRLHKNRKMPCPFLGSLNQ 295
SP++T F ++LC +LH + P FLGS Q
Sbjct: 45 SPSNTDFQTLLCLKLHLSND-PGGFLGSWKQ 74
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 467 PATPYHYENFFHDQINAK 520
PATP E +H+Q+NAK
Sbjct: 101 PATPCKNEEIYHEQVNAK 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,997,916
Number of Sequences: 37544
Number of extensions: 418061
Number of successful extensions: 1094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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