Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3c01
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_53065| Best HMM Match : Ribosomal_L35p (HMM E-Value=8.2) 30 2.3
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.3
SB_45498| Best HMM Match : Herpes_BLRF2 (HMM E-Value=6.1) 29 5.3
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 5.3
SB_14571| Best HMM Match : LTXXQ (HMM E-Value=6.6) 29 5.3
SB_10746| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.3
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_5732| Best HMM Match : LTXXQ (HMM E-Value=6.6) 29 5.3
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 29 5.3
SB_22587| Best HMM Match : LTXXQ (HMM E-Value=6.6) 29 5.3
SB_15162| Best HMM Match : LTXXQ (HMM E-Value=6.6) 29 5.3
SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69) 29 5.3
SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/87 (36%), Positives = 45/87 (51%)
Frame = +2
Query: 479 YHYENFFHDQINAKKRDYSYRVFRKVSRLAADGVYPKALEGPENRRVTVWCANDYLGTSR 658
+ YE FF +I KK D +YRVF+KV+RLA +P A E + G +
Sbjct: 200 FEYEKFFEGEIQKKKADDTYRVFKKVNRLAK--AFPHAQE--------------FSGAAN 243
Query: 659 HPTVQDAAVNAIKSYGTGAGGTRNIAG 739
+++ I +G GAGGTRNI+G
Sbjct: 244 KDSLE-----TIDVHGVGAGGTRNISG 265
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 269 CPFLGSLNQAFVKNYGATLMKQYGNYCPIISR 364
CPFL + F++ +++ Y CP++S+
Sbjct: 76 CPFLARMPSTFIRKARESVLLSYAETCPVMSK 107
>SB_53065| Best HMM Match : Ribosomal_L35p (HMM E-Value=8.2)
Length = 82
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 269 CPFLGSLNQAFVKNYGATLMKQYGNYCPIISR 364
CPFL + F++ +++ Y CP++S+
Sbjct: 21 CPFLARMPSTFIRKARESVLLSYAETCPVMSK 52
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 509 INAKKRDYSYRVFRKVSRLAADGVYPKALEGPENRRVTVWCANDY 643
+N K+ D R F ++ +A DG +P G + +T+ +ND+
Sbjct: 192 VNTKRLDRETRDFYQLVIVAVDGGFPLPRSGRKEVNITILDSNDH 236
>SB_45498| Best HMM Match : Herpes_BLRF2 (HMM E-Value=6.1)
Length = 325
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 35 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 68
>SB_14571| Best HMM Match : LTXXQ (HMM E-Value=6.6)
Length = 244
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114
>SB_10746| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 336
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 509 INAKKRDYSYRVFRKVSRLAADGVYPKALEGPENRRVTVWCANDY 643
+N K+ D R F ++ +A DG +P G + +T+ +ND+
Sbjct: 192 VNTKRLDRETRDFYQLVIVAVDGGFPLPRSGRKEVNITILDSNDH 236
>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 184 NFLELMLGQIANYCPIISRS--TLVKNSTSLEFIWQ 217
>SB_5732| Best HMM Match : LTXXQ (HMM E-Value=6.6)
Length = 369
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114
>SB_22587| Best HMM Match : LTXXQ (HMM E-Value=6.6)
Length = 204
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114
>SB_15162| Best HMM Match : LTXXQ (HMM E-Value=6.6)
Length = 401
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114
>SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 619
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 81 NFLELMLGQIANYCPIISRS--TLVKNSTSLEFIWQ 114
>SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 51 SSAKVRSNRYDDTNFINESRCQLSSQL 131
SS ++N Y+ T F+++ R QLSS+L
Sbjct: 22 SSPACKTNAYESTPFLSKIRSQLSSEL 48
>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 308 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 415
N+ ++ Q NYCPIISR +L + T FI Q
Sbjct: 138 NFLELMLGQIANYCPIISR--NTLVKNSTSQEFIWQ 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,067,730
Number of Sequences: 59808
Number of extensions: 480429
Number of successful extensions: 1178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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