Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3c01
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...    40   0.002
U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 608 NRRVTVWCANDYLGTSRHPTVQDAAVNAIKSYGTGAGGTRNIAG 739
           ++ V  +CAN+YLG S HP V  A   A++++G G    R I G
Sbjct: 66  DKPVINFCANNYLGLSSHPEVIAAGQKALETHGAGLSSVRFICG 109


>U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical
           protein C34G6.5 protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 445 FLRSFRNDRVLLNEGAFGFVISQRTKSTRYNRAIISV 335
           F R ++    ++ EG+FG VIS   ++T+  RAI ++
Sbjct: 23  FQRKYQLQENIIGEGSFGTVISATCRTTQEKRAIKAI 59


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 542 VFRKVSRLAADGVYPKALEGPENRRVTVWCANDYLGTSRHPTV-QDAAVNAIKSYGTGAG 718
           + R   R   D  + +   G E+  + +   N YLG S    V  +AA   I  YG   G
Sbjct: 112 IVRLKDRYTDDHGWTQKYTGTESEVINLGSYN-YLGFSHRSGVCAEAAAAHIDKYGINCG 170

Query: 719 GTRNIAGN 742
           G+R   GN
Sbjct: 171 GSRQEIGN 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,496
Number of Sequences: 27780
Number of extensions: 367382
Number of successful extensions: 1103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)