Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b23
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    29   0.21 
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   0.63 
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   3.4  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   5.9  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    24   7.8  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    24   7.8  

>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 181 TNRNLFYKSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTES 8
           T+   +Y+S + L+   RY +A+  +      HP D     L K +Q+ S + ++ ES
Sbjct: 134 THAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQKKSDDFEKRES 191


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -2

Query: 337 ILNDVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYK 158
           I+N     L  K  T ++ +R  L D  + V    + +DS  +G     ++E  RNLFYK
Sbjct: 215 IVNSDSLALMKKGVTIVNTSRGGLIDTKALV----DAIDSGQVGGCAIDVYEGERNLFYK 270

Query: 157 SIEDLIFK 134
            + + + K
Sbjct: 271 DLSNEVIK 278


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 178 WFQTRVVFANRWLDYLMDFRSTPHDLPNL 264
           +F+ R++FAN   DY++ F ++  ++ +L
Sbjct: 423 FFEKRILFANTTNDYIVPFGTSAMEVSSL 451


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 235 ENPLDSPAIGLQKQPLFETNR 173
           E P D P+IG +  PLFE+ R
Sbjct: 451 EPPNDEPSIGNELLPLFESLR 471


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = -2

Query: 331 NDVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPL-FETNRNLFYKS 155
           + +E LL      NI  +   LQ +     +S+N  +   + +QK  L F   +N     
Sbjct: 417 SQIEELLLQAELANISASSFSLQLMVIITAISDNLTNDDLLSIQKMSLNFTEKKNELQSW 476

Query: 154 IEDLIFKFRYKDAENHLI 101
              ++F   Y  A + ++
Sbjct: 477 SFFILFNICYNKAYSSML 494


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -2

Query: 124 KDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQ 23
           +D  ++L+  L++H +  +FN   +Y + +S+ Q
Sbjct: 109 RDYVDYLLDKLSFHAQHPEFNGTFEYKEYISLRQ 142


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 204 KPMAGLSNGFSLNTTRLAKSCSS 272
           KP  G+    S +TT+ AKS SS
Sbjct: 76  KPSVGIEKNPSFSTTKSAKSFSS 98


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 201 CKPMAGLSNGFSLNTTRLAKSCSSNLA 281
           C P+A L+ G SLN   +   C +  A
Sbjct: 140 CTPLANLAVGLSLNIQEVLIDCFATAA 166


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 252 LAKSCSSNLALSIFVCVLFCNKDSTSFKIKKK 347
           L   C+S L LS F   LF +   ++  +KKK
Sbjct: 274 LTTFCASILVLSFFQLPLFADHFLSALDVKKK 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,864
Number of Sequences: 5004
Number of extensions: 24970
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)