Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3b23
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 27 3.1
08_02_0002 + 11173365-11173512,11173528-11178470 27 4.0
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 27 5.3
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 5.3
08_02_0010 - 11230407-11232416 27 5.3
08_02_0009 + 11216532-11218687,11220727-11225998 27 5.3
08_02_0006 + 11204835-11206382 27 5.3
08_02_0003 + 11180421-11180757,11180773-11185715 27 5.3
08_01_1086 - 11150017-11151564 27 5.3
02_02_0537 + 11308195-11309667 27 5.3
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905... 26 7.1
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 26 7.1
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 26 9.3
01_05_0645 - 23899579-23904483 26 9.3
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 247 VVLSENPLDSPAIGLQKQPLFETNRNLFYKS 155
VV++EN +D PA + Q L +T R FY+S
Sbjct: 399 VVITENGMDQPANLSRDQYLRDTTRVHFYRS 429
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.1 bits (57), Expect = 4.0
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DLI++
Sbjct: 1369 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLIWQ- 1427
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 1428 KFKERQMKIFLGL----QDYFFDLL 1448
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 1178 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 1236
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 1237 KFKERQMKIFLGL----QDYFFDLL 1257
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 789 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 847
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 848 KFKERQMKIFLGL----QDYFFDLL 868
>08_02_0010 - 11230407-11232416
Length = 669
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 342 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 400
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 401 KFKERQMKIFLGL----QDYFFDLL 421
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 2148 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 2206
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 2207 KFKERQMKIFLGL----QDYFFDLL 2227
>08_02_0006 + 11204835-11206382
Length = 515
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 188 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 246
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 247 KFKERQMKIFLGL----QDYFFDLL 267
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 1432 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 1490
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 1491 KFKERQMKIFLGL----QDYFFDLL 1511
>08_01_1086 - 11150017-11151564
Length = 515
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 188 RTQPKAPCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 246
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 247 KFKERQMKIFLGL----QDYFFDLL 267
>02_02_0537 + 11308195-11309667
Length = 490
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL+++
Sbjct: 188 RTQPKAPCRSCAYKDSCQKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQ- 246
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 247 KFKERQMKIFLGL----QDYFFDLL 267
>11_03_0025 +
9047646-9047958,9048150-9048474,9049833-9051828,
9051991-9052190,9052851-9052899
Length = 960
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 237 LNTTRL---AKSCSSNLALSIFVCVLFCNKDSTSFKIKK 344
+ TTR+ AKSCS+NL ++ ++DS+ +KK
Sbjct: 244 ITTTRIMDVAKSCSANLQEYVYTIKPLNHQDSSKLFVKK 282
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 166 IGFDWFQTRVVFANRWLDYLMDFRSTPHDLPNLVAAI*LCRYS 294
+GFD F+ + +RW+DYL + + +V + RY+
Sbjct: 416 VGFD-FRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYT 457
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -2
Query: 136 KFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTESNA 2
+F+ K+A+N +TY P+D++ L++ ++ S ++ E +A
Sbjct: 129 QFQIKNADNVFNTVMTYMPQDFR-GTLIRQQRERSERNKQAEVDA 172
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 25.8 bits (54), Expect = 9.3
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -2
Query: 304 KTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNL--FYKSIEDLIFKF 131
+TQ +D + + S+NP+ + LQ + F+T + L F + I DL++
Sbjct: 1307 RTQPKAPCRSCAYKDSCQKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVW-H 1365
Query: 130 RYKDAENHLIFALTYHPKDYKFNEL 56
++K+ + + L +DY F+ L
Sbjct: 1366 KFKERQMKIFLGL----QDYFFDLL 1386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,422,945
Number of Sequences: 37544
Number of extensions: 126771
Number of successful extensions: 264
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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