Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3b23
(347 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ... 28 1.6
Z81557-8|CAD90179.1| 353|Caenorhabditis elegans Hypothetical pr... 28 2.1
AF039045-8|AAB94199.1| 300|Caenorhabditis elegans Hypothetical ... 28 2.1
AF039045-7|AAB94207.1| 333|Caenorhabditis elegans Hypothetical ... 28 2.1
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z48809-4|CAB76413.2| 332|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z77657-8|CAB01151.2| 386|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z35641-1|CAA84706.2| 863|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 26 6.4
Z81468-4|CAB03877.1| 394|Caenorhabditis elegans Hypothetical pr... 26 6.4
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 26 6.4
AL132863-7|CAJ80822.1| 231|Caenorhabditis elegans Hypothetical ... 26 6.4
AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical... 26 6.4
AL021181-1|CAA15983.1| 394|Caenorhabditis elegans Hypothetical ... 26 6.4
Z98877-8|CAB63404.3| 475|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 26 8.5
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 26 8.5
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 26 8.5
AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical ... 26 8.5
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 26 8.5
>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
protein K10E9.1 protein.
Length = 1451
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 100 FALTYHPKDYKFNELLKYVQQLSVNQQRTE 11
FAL Y + Y+FN++ K + Q+ +Q+ E
Sbjct: 363 FALKYPDRSYEFNKMYKKLYQIMEDQEEDE 392
>Z81557-8|CAD90179.1| 353|Caenorhabditis elegans Hypothetical
protein F59A1.14 protein.
Length = 353
Score = 27.9 bits (59), Expect = 2.1
Identities = 25/89 (28%), Positives = 37/89 (41%)
Frame = -2
Query: 313 LQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFK 134
+QN +Q +D R L + L ++ + + PA L P+F+TN I LI
Sbjct: 236 IQNLSQRTLDMQRQLFRSLVAQTLFPVFLMFIPAGILLCFPIFKTNMGPIEIIILPLITT 295
Query: 133 FRYKDAENHLIFALTYHPKDYKFNELLKY 47
+ DA + F Y KF KY
Sbjct: 296 QPFMDALVPMYFIKIYRMAILKFFCRSKY 324
>AF039045-8|AAB94199.1| 300|Caenorhabditis elegans Hypothetical
protein F15E11.2 protein.
Length = 300
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 189 KGCFCKPMAGLSNGFSLNTTRLAKSCS 269
KG +C+P + + NG N+T L C+
Sbjct: 218 KGKYCEPASAVENGKVCNSTSLTDGCT 244
>AF039045-7|AAB94207.1| 333|Caenorhabditis elegans Hypothetical
protein F15E11.11 protein.
Length = 333
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 189 KGCFCKPMAGLSNGFSLNTTRLAKSCS 269
KG +C+P + + NG N+T L C+
Sbjct: 251 KGKYCEPASAVENGKVCNSTSLTDGCT 277
>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical
protein F29D11.2 protein.
Length = 1153
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 244 VLSENPLDSPAIGLQKQPLFETNRNLFY-KSIEDLI 140
V+ P D P + KQ L N+FY K + DLI
Sbjct: 581 VMRHAPTDQPGVDAYKQMLISMLMNVFYQKKVIDLI 616
>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical
protein F29D11.2 protein.
Length = 1153
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 244 VLSENPLDSPAIGLQKQPLFETNRNLFY-KSIEDLI 140
V+ P D P + KQ L N+FY K + DLI
Sbjct: 581 VMRHAPTDQPGVDAYKQMLISMLMNVFYQKKVIDLI 616
>Z48809-4|CAB76413.2| 332|Caenorhabditis elegans Hypothetical
protein T01E8.7 protein.
Length = 332
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = -2
Query: 346 FFFILNDVESLLQNKTQTNIDKARLLLQDLASRVV--LSENPLDSPAIG-LQKQPLFETN 176
F F++ V N+ QTNI L L L S +V + P + L LF+ N
Sbjct: 254 FLFVIIQVSLEYHNQAQTNISLCLLSLHGLISTIVMLIVHKPYRDATLNILAASKLFQKN 313
Query: 175 RN 170
N
Sbjct: 314 TN 315
>Z77657-8|CAB01151.2| 386|Caenorhabditis elegans Hypothetical
protein F08H9.7 protein.
Length = 386
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 219 VQPSVCKNNPCLKPIETYFTNL 154
+QP+VCK P L P +T + L
Sbjct: 141 IQPAVCKQMPALCPTQTSYGGL 162
>Z35641-1|CAA84706.2| 863|Caenorhabditis elegans Hypothetical
protein C38H2.1 protein.
Length = 863
Score = 26.6 bits (56), Expect = 4.9
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = -3
Query: 276 DCCYKIWQVVW 244
+C YK+W+V+W
Sbjct: 781 ECTYKVWEVIW 791
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 208 GLQKQPLFETNRNLFYKSIEDLIFKF-RYKDAENHLIFALTYHPKDYKFNELLKY 47
G ++P E NR S ++ + RY+ +EN + +Y P Y FNE ++
Sbjct: 57 GHDEEPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSYEPGHYSFNEYQQF 111
>Z81468-4|CAB03877.1| 394|Caenorhabditis elegans Hypothetical
protein Y54G11B.1 protein.
Length = 394
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 190 LFETNRNLFYKSIEDLIFKFRYKDAENH 107
LF+TN NL Y IE ++FRY + H
Sbjct: 8 LFDTNNNLTYFVIEQ-FYRFRYLYSNVH 34
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 208 GLQKQPLFETNRNLFYKSIEDLIFKF-RYKDAENHLIFALTYHPKDYKFNELLKY 47
G ++P E NR S ++ + RY+ +EN + +Y P Y FNE ++
Sbjct: 57 GHDEEPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSYEPGHYSFNEYQQF 111
>AL132863-7|CAJ80822.1| 231|Caenorhabditis elegans Hypothetical
protein Y37H2A.12 protein.
Length = 231
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 205 LQKQPLFETNRNLFYKSIEDLIFKFRYKD 119
LQK+P+FE +N F K+I D + ++R D
Sbjct: 36 LQKKPVFEAYKN-FCKTIGDDLMEYREFD 63
>AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical
protein Y73F8A.26 protein.
Length = 476
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -2
Query: 334 LNDVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYK 158
+N+ ES L+ K+ +K RLL QD V+ NP + + + N YK
Sbjct: 203 VNEFESALE-KSIIQDEKCRLLCQDKIDWSVVDGNPEIDILLASMRASVIRCEHNCLYK 260
>AL021181-1|CAA15983.1| 394|Caenorhabditis elegans Hypothetical
protein Y54G11B.1 protein.
Length = 394
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 190 LFETNRNLFYKSIEDLIFKFRYKDAENH 107
LF+TN NL Y IE ++FRY + H
Sbjct: 8 LFDTNNNLTYFVIEQ-FYRFRYLYSNVH 34
>Z98877-8|CAB63404.3| 475|Caenorhabditis elegans Hypothetical
protein Y69H2.7 protein.
Length = 475
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -2
Query: 208 GLQKQPLFETNRNLFYKSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSV 29
G+ +Q F + +KS + +FK +Y ++EN +F + + + + ++ L Q L V
Sbjct: 226 GIVRQCKFTYSGRNTFKSF-NYMFKHKYCESENFQLFYMNHEGRFMEVHDTLTLKQMLIV 284
Query: 28 N 26
+
Sbjct: 285 H 285
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 328 DVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRN 170
DV +++ K ++ +L RV+LS P QP+FET+ N
Sbjct: 340 DVSTIIAKKASLSVKITKLTGM---VRVILSRQPYHHWTFSFVSQPIFETDIN 389
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 328 DVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRN 170
DV +++ K ++ +L RV+LS P QP+FET+ N
Sbjct: 169 DVSTIIAKKASLSVKITKLTGM---VRVILSRQPYHHWTFSFVSQPIFETDIN 218
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 328 DVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRN 170
DV +++ K ++ +L RV+LS P QP+FET+ N
Sbjct: 169 DVSTIIAKKASLSVKITKLTGM---VRVILSRQPYHHWTFSFVSQPIFETDIN 218
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 328 DVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRN 170
DV +++ K ++ +L RV+LS P QP+FET+ N
Sbjct: 340 DVSTIIAKKASLSVKITKLTGM---VRVILSRQPYHHWTFSFVSQPIFETDIN 389
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 328 DVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRN 170
DV +++ K ++ +L RV+LS P QP+FET+ N
Sbjct: 340 DVSTIIAKKASLSVKITKLTGM---VRVILSRQPYHHWTFSFVSQPIFETDIN 389
>AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical
protein R08F11.2 protein.
Length = 333
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 178 WFQTRVVFANRWLDYLMDFRSTPHDLPNLVAAI*LCRYSFVFCFV 312
WF ++F NR +Y + PH + N + C FCFV
Sbjct: 182 WFFDPMIFVNRTDEYA----NIPHGVNNFLVVGLTCLLYVSFCFV 222
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 169 LFYKSIEDLIFKFRYKDAENHLIFALTYHP-KDYKFNELLKYVQQLSVNQQRTESNA 2
+ YK + D + R + + A+ YH DY+ NE+L ++ L+ QR ++ A
Sbjct: 898 IMYKLLGDEYPEVRQAASYGFGVMAINYHQISDYR-NEILSCLEPLAAMIQREDARA 953
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,158,699
Number of Sequences: 27780
Number of extensions: 135292
Number of successful extensions: 399
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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