Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b21
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    27   2.5  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   4.4  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.8  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   7.7  

>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   GLCFGIFVFVFFLLKCRVQKVITKF 75
           GLC  +F   FFL+K R+Q    KF
Sbjct: 139 GLCGALFGSPFFLVKTRMQSYSPKF 163


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 132 YKTRINYYSELDNQEFQLRFRLDKQSVQLLLG 227
           YKTRI YY++  + EF   +  D +++ +  G
Sbjct: 324 YKTRICYYTDTADAEFVFDYHPDYENLFVCTG 355


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 236 YPFLKVKGTRNHGISPLHYNLSVC 307
           YPF K   ++N  + P+ Y+LS C
Sbjct: 148 YPFGKDHASKNMELLPITYDLSFC 171


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 82  NIKTSLSLSELDILKEKTQTQKFQS 8
           N+KT L +S LDILK  T+   +++
Sbjct: 258 NLKTVLFISHLDILKSITKQTYYEN 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,753
Number of Sequences: 5004
Number of extensions: 32878
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)