Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b21
         (563 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.1  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 141  RINYYSELDNQEFQLRFRLDKQSVQLLLGEIYILF*R*KEPGIMEYLPYITIYQF 305
            RIN    ++N  FQ R    +  +Q   GEI     +    G M+++P     +F
Sbjct: 1499 RINKLGSIENLSFQSRISNCRIEIQPAYGEILQKTKQNTFAGSMQHVPDTAALRF 1553


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 141  RINYYSELDNQEFQLRFRLDKQSVQLLLGEIYILF*R*KEPGIMEYLPYITIYQF 305
            RIN    ++N  FQ R    +  +Q   GEI     +    G M+++P     +F
Sbjct: 1500 RINKLGSIENLSFQSRISNCRIEIQPAYGEILQKTKQNTFAGSMQHVPDTAALRF 1554


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,983
Number of Sequences: 2352
Number of extensions: 6843
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)