Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b21
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical...    28   4.0  
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical
           protein R08C7.4 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 311 HYKLINCNVREIFHDSW 261
           HY+L+ C+ R  FH  W
Sbjct: 138 HYRLVECHYRSKFHSKW 154


>AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical
           protein R07C3.4 protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 389 KRQMSPDRAKIPKKNVLASYFVVRLFHYKLINCNVREIFHDSWFL 255
           K  MS  + K  KK +L S    +L+HYK+     R+   D + L
Sbjct: 390 KSVMSQVQDKPVKKMILNSAIAYKLYHYKMTGKATRDTLVDKYIL 434


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 239 PFLKVKGTRNHGISPLHYNLSVCNEINEQQST 334
           P L+  GT+NH  +P+H +  +  +   +++T
Sbjct: 107 PILRSSGTKNHNYAPIHQSAILLPQYQSRKTT 138


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 305 KLINCNVREIFHDSWFLLPLKKDINFT 225
           KL    + E +HD W++  +KKD N+T
Sbjct: 522 KLFKTGILEKWHDFWWVGLIKKDSNWT 548


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 311 HYKLINCNVREIFHDSWFL 255
           HY+L+ C+ R  FH  W +
Sbjct: 205 HYRLLECHHRSRFHSKWVI 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,696
Number of Sequences: 27780
Number of extensions: 182494
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)