Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b21
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   3.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 558 FFKIHKFLLVFLHKY 514
           FF I+K +L + HKY
Sbjct: 417 FFSIYKTILDYYHKY 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 558 FFKIHKFLLVFLHKY 514
           FF I+K +L + HKY
Sbjct: 417 FFSIYKTILDYYHKY 431


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 558 FFKIHKFLLVFLHKY 514
           FF I+K +L + HKY
Sbjct: 43  FFSIYKTILDYYHKY 57


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 266 NHGISPLHYNLSVCNEI 316
           N+   PLHYN++   +I
Sbjct: 328 NNNYKPLHYNINYIEQI 344


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 272 GISPLHYNLSVCNEINEQQSTTLTH 346
           G   +H N+ V   ++  +STT  H
Sbjct: 2   GKEKIHINIVVIGHVDSGKSTTTGH 26


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 272 GISPLHYNLSVCNEINEQQSTTLTH 346
           G   +H N+ V   ++  +STT  H
Sbjct: 2   GKEKIHINIVVIGHVDSGKSTTTGH 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,040
Number of Sequences: 438
Number of extensions: 2088
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)