Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3b19
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 39 7e-04
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 29 0.43
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.76
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.76
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 26 4.0
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 7.1
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 7.1
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 7.1
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 7.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.1
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 9.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.3
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 9.3
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 9.3
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 38.7 bits (86), Expect = 7e-04
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Frame = -1
Query: 551 SKILSVLLSNSCVLRSSHS-LNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKS 375
S + SVL S+S + SS S + S T + S + +P+ ++ S S +L S + + S
Sbjct: 533 SPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTS 591
Query: 374 TSIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS 195
SI +T+ S + SSS +S++ +LSSP S S++I S SI S
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSS--TILSSPT---PSTSSLMISSSSIISGS 646
Query: 194 KGLMAFIKSSFCSGVVNGKSIEKLSSSV-HSSGTL 93
++ SS S + S+ SSSV SS TL
Sbjct: 647 SSIL----SSSISTIPISSSLSTYSSSVIPSSSTL 677
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 29.5 bits (63), Expect = 0.43
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +1
Query: 43 DXIPDENDPENVTVRLNSVP-----EECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLN 207
D IP+E+D E + V +VP E D++N+ ++L NA++ E +
Sbjct: 2 DSIPNEDDLEKLLVAEQNVPYGKNYESFEDEENYLLELRNA---------NALENLEHRS 52
Query: 208 IESDIIKTEQ-TDAPATSGDD 267
I +D+ + Q +P +GDD
Sbjct: 53 IPNDLFHSSQPVGSPTRNGDD 73
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 28.7 bits (61), Expect = 0.76
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 76 VTVRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ 237
VT+ L VP+ + S DLPLT D+F + L I ++TEQ
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQ 693
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.76
Identities = 39/151 (25%), Positives = 57/151 (37%), Gaps = 2/151 (1%)
Frame = -1
Query: 521 SCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YAT 342
S S S SS + TS + + S S +S + ++ S+ T
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT 231
Query: 341 YFDLSFK--PSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKS 168
LS PST SSS S++ SS + +S S +I S S S + S
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 167 SFCSGVVNGKSIEKLSSSVHSSGTLFRRTVT 75
S S + S SS SS + F T++
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSSSSFSSTLS 322
Score = 27.1 bits (57), Expect = 2.3
Identities = 39/146 (26%), Positives = 59/146 (40%)
Frame = -1
Query: 551 SKILSVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKST 372
S I S S+S +S +++ SS+ TS + + + S S S L+ + S+
Sbjct: 271 SIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS-SFSSTLSSSSMSSS 329
Query: 371 SIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSK 192
S F ++ +S S+ SSSF+STT SS + S S S S
Sbjct: 330 SSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSS 389
Query: 191 GLMAFIKSSFCSGVVNGKSIEKLSSS 114
SS S + + KS SS
Sbjct: 390 SSRPASSSSHSSSLSSHKSSSSSKSS 415
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 457 EVLRSIFVDEPFKLWLERNTHEFDNN 534
EV+ IF +K W E NT F N+
Sbjct: 318 EVIDKIFNGNAYKRWTEENTSNFSND 343
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 214 SDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGL 324
SDI +T + P G N + KV + +EDE D L
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDEL 4411
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 55 DENDPENVTVRLNSVPEECTDDDNFSIDLPLTTPEQK 165
+E +P +V + L P E DDN ++ + E+K
Sbjct: 85 NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIKEEK 121
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 115 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDA 294
+++N + PL E D F + P L++ E PA+ +NNN DA
Sbjct: 641 NEENSELPPPLEPAEIGDPFRSVNDPRRVLSLPHMASADEDHRIPASDNQNNNNN---DA 697
Query: 295 N 297
N
Sbjct: 698 N 698
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 130 SIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 231
S+D+P+ D ++A+K F+TL +++ +II T
Sbjct: 1174 SVDVPVIIKISLDSHLDALKMFDTLFHVKLEIITT 1208
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.4 bits (53), Expect = 7.1
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Frame = +1
Query: 88 LNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGD- 264
L +PE+ + SI + P + I+P E L +E K P G
Sbjct: 1369 LLEIPEKSYLTEKVSISMIFAHPSVSGIYETRIEPIERLILEMGSRKRFNNSVPGALGKG 1428
Query: 265 ---DNNNRKVVDANEDEYT-VDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQV 432
++ D ++++ + +DG+++ Y ++ V L M K+ Y+++
Sbjct: 1429 FEFGFESKMFTDPSDNDVSYLDGVEMNYLYAFHFSISNRFVFSLFMPHLKKVEAIIYDKL 1488
Query: 433 ------YTLGRQLYEVLRSIF 477
+ ++YE LRS F
Sbjct: 1489 PGSDMSFPSISKIYEELRSKF 1509
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 352 YKCLKILVDFLVMYVSKETNMKEYEQVYTL 441
Y C+ + F++ +++KET E+V L
Sbjct: 437 YACINLFSSFMIFFLAKETKGLTLEEVNDL 466
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 196 ETLNIESDIIKTEQTDAPATSGDDNNN 276
ET N+ES K D A S +DNNN
Sbjct: 110 ETHNLESPAWKHADYDGVAASVNDNNN 136
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 97 VPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLN 207
+P ++ F+ID P+Q+D +NA+ F N
Sbjct: 910 MPRSLFEEIFFAIDSLTPNPQQQDTVINAVPTFAPYN 946
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.1
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -1
Query: 317 STVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGK 138
+TV SSS +STT SSP + + + S S S + SS S +
Sbjct: 125 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 137 SIEKLSSSVHSSGT 96
S SSS SS +
Sbjct: 185 SSSSSSSSSSSSSS 198
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 259 GDDNNNRKVVDANEDEYTVDGLKLKSK 339
G N V+D NEDE +V ++L+ K
Sbjct: 480 GFKNKGNIVIDENEDEPSVQTIQLQGK 506
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 176 IKSSFCSGVVNGKSIEK 126
++SSFCSG+ N + +EK
Sbjct: 97 LQSSFCSGIENLQHVEK 113
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 340 YVAYYKCLKILVDFL-----VMYVSKETNMKEYEQVYTLGRQLYEVLRSIFVDEPFKLWL 504
Y+ ++CL I+++FL + +++ + EQV + RQ+++ L I + F +
Sbjct: 103 YIDQFRCLHIVMEFLDCNLYQLISTRKNDPLTLEQVQDIMRQIFKGLNHIHTNGFFHRDM 162
Query: 505 ERNTHEFDNNTD 540
+ +N+D
Sbjct: 163 KPENILISSNSD 174
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 22 SSXKIXADXIPDENDPENVTVRLNSVPEECTDDDNFSIDLPLTTPEQKDD 171
S I + E PEN +SVPE +D S+ L + PE K +
Sbjct: 484 SENSIASKPSATEGIPENAIALQSSVPENKAED---SVVLKSSVPEDKSE 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,503
Number of Sequences: 5004
Number of extensions: 50217
Number of successful extensions: 168
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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