Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3b19
(644 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein pr... 31 1.3
M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clo... 31 1.3
M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clo... 31 1.3
AL024485-7|CAA19677.1| 1156|Drosophila melanogaster EG:155E2.4,F... 31 1.3
AL024485-5|CAA19679.1| 1116|Drosophila melanogaster EG:155E2.4,F... 31 1.3
AL024485-4|CAA19678.1| 1212|Drosophila melanogaster EG:155E2.4,F... 31 1.3
AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock... 31 1.3
AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA ... 31 1.3
AB029252-1|BAB15926.1| 143|Drosophila melanogaster period protein. 31 1.3
AB029251-1|BAB15925.1| 143|Drosophila melanogaster period protein. 31 1.3
AB029250-1|BAB15924.1| 143|Drosophila melanogaster period protein. 31 1.3
X75541-1|CAA53229.1| 1355|Drosophila melanogaster spalt protein ... 30 3.1
AE014134-2066|AAF53097.3| 1365|Drosophila melanogaster CG6464-PA... 30 3.1
>X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein
protein.
Length = 1127
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1044 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1083
>M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clock
protein B protein.
Length = 1122
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1039 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1078
>M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clock
protein A protein.
Length = 1218
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1135 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1174
>AL024485-7|CAA19677.1| 1156|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1156
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1073 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1112
>AL024485-5|CAA19679.1| 1116|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1116
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1033 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1072
>AL024485-4|CAA19678.1| 1212|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1212
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1129 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1168
>AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock
protein protein.
Length = 1224
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1141 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1180
>AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA
protein.
Length = 1218
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1135 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1174
>AB029252-1|BAB15926.1| 143|Drosophila melanogaster period protein.
Length = 143
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 66 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 105
>AB029251-1|BAB15925.1| 143|Drosophila melanogaster period protein.
Length = 143
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 66 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYPSFIK 105
>AB029250-1|BAB15924.1| 143|Drosophila melanogaster period protein.
Length = 143
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 238 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 357
+D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 66 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 105
>X75541-1|CAA53229.1| 1355|Drosophila melanogaster spalt protein
protein.
Length = 1355
Score = 29.9 bits (64), Expect = 3.1
Identities = 21/96 (21%), Positives = 37/96 (38%)
Frame = +1
Query: 52 PDENDPENVTVRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKT 231
P+E PE + S+PE+ T D D+ K + + I+P E N + K
Sbjct: 80 PEEEQPEEQSTSEQSIPEQSTPDHQLENDI-------KSEAKSEIEPVEDNNNRVAMTKP 132
Query: 232 EQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSK 339
+ + + V +A+ +E + K K
Sbjct: 133 SSEEREPNASGSMPSSPVAEASAEEAATERTPEKEK 168
>AE014134-2066|AAF53097.3| 1365|Drosophila melanogaster CG6464-PA
protein.
Length = 1365
Score = 29.9 bits (64), Expect = 3.1
Identities = 21/96 (21%), Positives = 37/96 (38%)
Frame = +1
Query: 52 PDENDPENVTVRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKT 231
P+E PE + S+PE+ T D D+ K + + I+P E N + K
Sbjct: 80 PEEEQPEEQSTSEQSIPEQSTPDHQLENDI-------KSEAKSEIEPVEDNNNRVAMTKP 132
Query: 232 EQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSK 339
+ + + V +A+ +E + K K
Sbjct: 133 SSEEREPNASGSMPSSPVAEASAEEAATERTPEKEK 168
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,959,955
Number of Sequences: 53049
Number of extensions: 543480
Number of successful extensions: 1433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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