Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b19
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical p...    34   0.099
Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical p...    34   0.099
Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    29   2.1  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    29   2.8  
AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical...    28   4.9  
U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    28   6.5  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protei...    27   8.6  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical
           protein F47B8.9b protein.
          Length = 257

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 494 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 345
           LNG+S ++   T+ Y    NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 6   LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56


>Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical
           protein F47B8.9a protein.
          Length = 338

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 494 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 345
           LNG+S ++   T+ Y    NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 6   LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56


>Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical
           protein C43D7.5 protein.
          Length = 152

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +1

Query: 73  NVTVRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPA 252
           NV  ++++  + C + + +S      T ++KD+F N     +T+N   +    E+ D   
Sbjct: 7   NVDTKVDNRKDNCDNTNTYS-----HTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVNM 61

Query: 253 TSGDDN-NNRKVVDANEDEYTV 315
              +DN NNR+  ++    Y++
Sbjct: 62  YRRNDNCNNREATNSRSANYSI 83


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
 Frame = -1

Query: 548 KILSVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITK--KS 375
           K + ++  N  V     S  G S + +  TS+  LP +++ ++  + ++    +TK  + 
Sbjct: 512 KSMDLVSENISVQNKEVSTTGLSARPICDTSFRILPILFSPAFFKVEIAHSKSLTKLYQQ 571

Query: 374 TSIFKHL*Y--ATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFK 201
            SIF  + Y  AT+  L+   S+ +  S  S   R L  S   +   V ++    D  + 
Sbjct: 572 CSIFASVSYSDATWEPLNDLDSSYFEMSAHSDNERALAVSHHASKVHVIAI----DENWP 627

Query: 200 VSKGLMAFIKSSFCSGVVNGKSIEKLSSSV 111
           +    ++   S+ C+  +NG S   L+ +V
Sbjct: 628 LPVVEISLQSSAQCASTINGASPAALAVTV 657


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 208 IESDIIKTEQTDAPATSGDDNNNR-KVVDANEDEYTVDGLKLK 333
           +ES +I  E  +     G D + R KVV+ +++E T D  K +
Sbjct: 288 VESSVISQEVPETGYGDGGDKSKREKVVETHQEEQTYDSFKFE 330


>AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.33 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 52  PDENDPENVTVRLNSVPEECTDDD 123
           PD N   N  +RL  VP  C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172


>U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical
           protein C18F3.4 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 55  DENDPENVTVRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 231
           D ND +  T   NSV E   DD++ S +  L+ P ++ +      P  +L  I S  +K 
Sbjct: 60  DPND-DQPTTSSNSVKESINDDESNSENNKLSPPRRQSN------PHSSLPAISSSTVKN 112

Query: 232 EQTDAPATSGDDNN 273
           E TD+   S   N+
Sbjct: 113 EPTDSWTPSALSND 126


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 151 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 309
           TPE+    M+   P +T  I   II TE  D+P+        RK  D   +E+
Sbjct: 326 TPERYTQHMSPNLPLQTATIAPLIIPTENYDSPSYR-QPAIKRKATDLTNEEH 377


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = -2

Query: 532 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 398
           CC+ R CC        R + CC   RT  C   CT  R   C   C
Sbjct: 68  CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 107


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = -2

Query: 532 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 398
           CC+ R CC        R + CC   RT  C   CT  R   C   C
Sbjct: 70  CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 109


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = -2

Query: 532 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 398
           CC+ R CC        R + CC   RT  C   CT  R   C   C
Sbjct: 73  CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 112


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 518 CVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKH 357
           C   +  S N  + K L   + NC  +  T ++ FM+ +L  ++     SI K+
Sbjct: 642 CQWHTVTSANAQALKNLYTIANNCTEDAITWTHQFMIENLEVHMLASYLSILKY 695


>U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protein
           175 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -1

Query: 284 TFRLLLS---SPLVAGASVCSVLIISDSIFKVSKGL 186
           TF L +S   S +V  AS+CSVL+I + I K+S+ +
Sbjct: 2   TFALTVSCATSAVVITASLCSVLVIMNDINKLSEDI 37


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 10  RMSLSSXKIXADXIPDENDPENVTVRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK 189
           R    + K   D   DE  PEN    + +   E  +DDN S D      E+++ F+  +K
Sbjct: 307 RRRAEAGKSKFDSSSDEESPENEKFPVGNGKSEYQEDDNDSED---DLEERREQFIRCVK 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,591
Number of Sequences: 27780
Number of extensions: 290783
Number of successful extensions: 782
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)