Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b16
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    34   0.041
06_03_0247 + 18679278-18679319,18679522-18679620,18679897-186801...    33   0.072
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906...    33   0.095
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    28   2.0  
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720...    28   2.0  
03_02_0730 + 10784784-10785341                                         28   2.0  
08_02_1326 - 26158279-26159712                                         27   6.2  
06_01_0207 + 1579343-1579529,1579610-1579659,1579896-1580092,158...    27   6.2  
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    26   8.2  

>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 33.9 bits (74), Expect = 0.041
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 295 DIIFRKVRGILNKLTPEKFXKLSDDL 372
           D + + V+GILNKLTPEKF  L   L
Sbjct: 205 DRVLKTVKGILNKLTPEKFDLLKGQL 230


>06_03_0247 +
           18679278-18679319,18679522-18679620,18679897-18680100,
           18680334-18680431,18680554-18680641,18680728-18681078,
           18682093-18682623
          Length = 470

 Score = 33.1 bits (72), Expect = 0.072
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 289 KYDIIFRKVRGILNKLTPEKFXKLSDDL 372
           KY ++ + V+GILN LTPEKF  L D L
Sbjct: 139 KYKVL-KTVKGILNLLTPEKFDILKDQL 165


>02_04_0585 -
           24088344-24089366,24089833-24090075,24090305-24090655,
           24090736-24090823,24091178-24091275,24091813-24092025,
           24092150-24092245,24093124-24093195,24093909-24094067
          Length = 780

 Score = 32.7 bits (71), Expect = 0.095
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 301 IFRKVRGILNKLTPEKFXKLSDDL 372
           + + V+GILNKLTPEKF  L   L
Sbjct: 207 VLKTVKGILNKLTPEKFDLLKGQL 230


>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
            22061666-22061867,22062273-22062344,22062509-22062573,
            22062682-22062741,22063033-22064379,22064463-22064607,
            22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 307  RKVRGILNKLTPEKFXKL 360
            R+++ ILNKLTP+ F KL
Sbjct: 1570 RQLKAILNKLTPQNFEKL 1587


>06_03_0526 +
           21771519-21771607,21771685-21771810,21771890-21772010,
           21772123-21772851,21772954-21773349,21774594-21774665,
           21774741-21774803,21775236-21775337
          Length = 565

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 240 PASPRGXWRPPRGDARGPRLPR 175
           PA P   WRPPR  AR    PR
Sbjct: 230 PAPPPPLWRPPRRRARSSSSPR 251


>03_02_0730 + 10784784-10785341
          Length = 185

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 234 SPRGXWRPPRGDARGPR 184
           SP   W+P  GD RGPR
Sbjct: 41  SPPATWQPGEGDVRGPR 57


>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 142 AGDSTGSKTDSARQPGPARI 201
           AG+STG+K+   R P P R+
Sbjct: 361 AGESTGTKSGKKRGPAPLRV 380


>06_01_0207 +
           1579343-1579529,1579610-1579659,1579896-1580092,
           1580343-1580469,1580562-1580693
          Length = 230

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 121 GGDSGTLAGDSTGSKTDSARQPGPAR 198
           GG+ G +AGDS+G + +S      AR
Sbjct: 51  GGEKGAVAGDSSGKQGESDAAKNKAR 76


>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 130 SGTLAGDSTGSKTDSARQPGP 192
           S T  GD+TG+  D+ RQP P
Sbjct: 730 SFTREGDATGTHADAQRQPWP 750


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,983,755
Number of Sequences: 37544
Number of extensions: 71734
Number of successful extensions: 251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)