Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b16
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical ...    26   9.9  

>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 136  TLAGDSTGSKTDSARQPGPARIASG 210
            T+AGD++   T +ARQP  A+ +SG
Sbjct: 1261 TMAGDTSAQATTTARQPLTAQQSSG 1285


>AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical
           protein C17B7.9 protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 15  NELSCCVAVRVLSTN*LSTPRYLRVGVHTRSXD 113
           N LSC   ++ L TN    P    +G H R+ D
Sbjct: 73  NVLSCYNKIKCLGTNGEKIPAIKNIGKHCRATD 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,798,690
Number of Sequences: 27780
Number of extensions: 52856
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)