Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b07
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              132   8e-32
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.38 
SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)               29   2.0  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   4.6  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 27   8.1  
SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  132 bits (320), Expect = 8e-32
 Identities = 68/115 (59%), Positives = 78/115 (67%)
 Frame = +3

Query: 18  PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEV 197
           PPKKD K  AK+PQ                           LNN VLFDK TY+KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59

Query: 198 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 362
           P Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 322  WCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 143
            WC     +RPF LSS++  L R      +  ++ GV     GT     S  G++   W  
Sbjct: 2144 WCGPVYFVRPFCLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSA 2198

Query: 142  NLSRTFPL 119
            + +R  P+
Sbjct: 2199 SRTREMPV 2206


>SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)
          Length = 389

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = -2

Query: 383 YHSLCDWII---ALGRTCVDH------LPMVLDYLFDETFFPKL 279
           YH+ CDW+      G TC+ H         +L+YLF   F P++
Sbjct: 65  YHAFCDWLFDGSNAGYTCLAHNFKGYDYYFILEYLFTNGFKPEV 108


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 196 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 113
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 49  NSLKKHRRRRKDPVAAKPRRRSGPK 123
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 151 WLFNLSRTFPLDHFFFLALPPPDPSFFFC--VF*GCLAEAFASF 26
           WL   + TFPL  +  + + P DP  ++C  +F G    +F S+
Sbjct: 154 WLAATAITFPLFMYSKMVMSPFDPDTYWCFVLFPGDSLSSFPSY 197


>SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 210 ACTVGLPCTVSHTWVYQTTPGCSTCHELFL 121
           ACT  +  T++ ++ Y+ T G S+C+ +F+
Sbjct: 244 ACTEIVLVTLAFSYTYRLTLGLSSCYRVFV 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,024,659
Number of Sequences: 59808
Number of extensions: 284409
Number of successful extensions: 948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)