Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b03
         (338 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.092
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   2.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   3.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   3.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   4.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 26.2 bits (55), Expect = 0.092
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 239 QSLTLQLLSAFAHAVRCLAFLGLPYGLINLFLVRVHF 129
           Q +  Q +  F H+VR + FL   +GL+NL     +F
Sbjct: 362 QYVMQQQVKNFRHSVRSVFFLSEIFGLVNLKYRETYF 398


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 322 DDEDIVELPKPLPKDICE 269
           DDED +E P P+   + E
Sbjct: 479 DDEDAIEKPAPVKISVQE 496


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 238 WRRPNVASRRAHRCPS 285
           +R P+  +  AH CPS
Sbjct: 335 FRMPHKCNGNAHNCPS 350


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 238 WRRPNVASRRAHRCPS 285
           +R P+  +  AH CPS
Sbjct: 342 FRMPHKCNGNAHNCPS 357


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 248 GRLQSLTLQLLSAFAHAVRCLAFLGLPYGLINL 150
           G    L    L+A AH     AF G P  ++N+
Sbjct: 198 GGAPPLVSPFLAAMAHRPPHFAFPGAPGHILNI 230


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 334 DSDGDDEDIVELPKPLPKDICERGGWPRLAASNLS 230
           D D  D+D+ E   PLP      GG  + AA N S
Sbjct: 238 DDDDKDQDMDEGDLPLP---AAPGGDSQQAALNYS 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,221
Number of Sequences: 336
Number of extensions: 1240
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)