Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b03
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    55   3e-09
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    28   0.34 
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    25   3.2  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    25   4.2  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    24   5.5  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    24   7.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    23   9.6  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    23   9.6  

>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 55.2 bits (127), Expect = 3e-09
 Identities = 27/83 (32%), Positives = 44/83 (53%)
 Frame = +3

Query: 6   CVQLTETEXXXXXXXXXXXXDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXX 185
           C  L E E            DE  +LGYR++V+L Q+++++EM+SHEEKI + V + +  
Sbjct: 94  CSSLEEREILEYAFEIFTAFDEATSLGYRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEI 153

Query: 186 XXXXXXXXXXXXLQRERLEAAKR 254
                       L+ ++ EAA+R
Sbjct: 154 EATEERKRRIKQLELQKKEAARR 176


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 223 CSVRDWRRPNVASRRAHRCPSAVALVARRCPRRLH 327
           C  ++WRRP   +  A +CPS +A+     P  ++
Sbjct: 189 CGRQNWRRPVNFASHAKQCPSFLAMDPNNIPPEIN 223


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +1

Query: 175 PKNARQRTACANALRSCSVRDWRRPNVASRRAHRCPSA-VALVARRCPR-----RLHLNL 336
           PK  R   +C N L+   ++  R P +        P A V L A   PR     R+HL +
Sbjct: 16  PKKGRLYESCVNVLKGSDIKFRRNPRLDIALVQNLPIALVFLPAADIPRFVGTGRVHLGI 75


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 284 EGHL*ARRLATFGRLQSLTLQLLSAFAHAVRCL 186
           EGH  +R+  + G     T+ L SAF  A  CL
Sbjct: 182 EGHFGSRQNGSVGLSNERTILLQSAFMPAKACL 214


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = +1

Query: 178 KNARQRTACANALRSC-----SVRDWRRPNVASRRAHR 276
           + A   T    AL+SC     + RDW R   A R+ HR
Sbjct: 829 REAFSATLFKAALKSCFYDLQNARDWYREVTADRKMHR 866


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 327 METTRTSSSYQSHCRRTSV---SAAAGHVWPPPISHAATP*RVRACGSLPR 184
           +E    S    S  R ++V     A+G   P P+SH  T  RV A G+  R
Sbjct: 226 LEKPSVSKQSSSRTRLSTVYRTKLASGKSIPRPLSHKLTRPRVTASGNSRR 276


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 273 VSAAAGHVWPPPISHAATP*RVRACG 196
           + + AG +  PP+  AATP  +  CG
Sbjct: 524 IYSPAGRLLLPPVVVAATPCFLECCG 549


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 334 DSDGDDEDIVELPKPLPKDICERG 263
           D+DGDD    E   P+ KD   RG
Sbjct: 132 DNDGDDYSFFEDDLPVIKDTFMRG 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,703
Number of Sequences: 5004
Number of extensions: 19432
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)