Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3b03
(338 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X81198-1|CAA57072.1| 472|Homo sapiens archain protein. 81 1e-15
X81197-1|CAA57071.1| 511|Homo sapiens archain protein. 81 1e-15
BC093638-1|AAH93638.1| 511|Homo sapiens archain protein. 81 1e-15
BC093636-1|AAH93636.1| 511|Homo sapiens archain 1 protein. 81 1e-15
BC064936-1|AAH64936.1| 189|Homo sapiens ARCN1 protein protein. 75 4e-14
BC032828-1|AAH32828.1| 443|Homo sapiens SFRP4 protein protein. 31 0.91
M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth f... 29 3.7
J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth f... 29 3.7
BC032224-1|AAH32224.1| 1106|Homo sapiens platelet-derived growth... 29 3.7
AB209657-1|BAD92894.1| 777|Homo sapiens platelet-derived growth... 29 3.7
BC036022-1|AAH36022.1| 753|Homo sapiens transcription elongatio... 29 4.8
BC103911-1|AAI03912.1| 753|Homo sapiens transcription elongatio... 28 8.5
AB030834-1|BAA90665.1| 753|Homo sapiens transcription factor El... 28 8.5
>X81198-1|CAA57072.1| 472|Homo sapiens archain protein.
Length = 472
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/86 (46%), Positives = 52/86 (60%)
Frame = +3
Query: 3 YCVQLTETEXXXXXXXXXXXXDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQX 182
YC L E E DEIVALGYRE+VNLAQ+R+F EMDSHEEK+++AVR+TQ
Sbjct: 54 YCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQE 113
Query: 183 XXXXXXXXXXXXXLQRERLEAAKRGQ 260
LQ+ R +A ++G+
Sbjct: 114 REAKAEMRRKAKELQQARRDAERQGK 139
>X81197-1|CAA57071.1| 511|Homo sapiens archain protein.
Length = 511
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/86 (46%), Positives = 52/86 (60%)
Frame = +3
Query: 3 YCVQLTETEXXXXXXXXXXXXDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQX 182
YC L E E DEIVALGYRE+VNLAQ+R+F EMDSHEEK+++AVR+TQ
Sbjct: 93 YCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQE 152
Query: 183 XXXXXXXXXXXXXLQRERLEAAKRGQ 260
LQ+ R +A ++G+
Sbjct: 153 REAKAEMRRKAKELQQARRDAERQGK 178
>BC093638-1|AAH93638.1| 511|Homo sapiens archain protein.
Length = 511
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/86 (46%), Positives = 52/86 (60%)
Frame = +3
Query: 3 YCVQLTETEXXXXXXXXXXXXDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQX 182
YC L E E DEIVALGYRE+VNLAQ+R+F EMDSHEEK+++AVR+TQ
Sbjct: 93 YCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQE 152
Query: 183 XXXXXXXXXXXXXLQRERLEAAKRGQ 260
LQ+ R +A ++G+
Sbjct: 153 REAKAEMRRKAKELQQARRDAERQGK 178
>BC093636-1|AAH93636.1| 511|Homo sapiens archain 1 protein.
Length = 511
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/86 (46%), Positives = 52/86 (60%)
Frame = +3
Query: 3 YCVQLTETEXXXXXXXXXXXXDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQX 182
YC L E E DEIVALGYRE+VNLAQ+R+F EMDSHEEK+++AVR+TQ
Sbjct: 93 YCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQE 152
Query: 183 XXXXXXXXXXXXXLQRERLEAAKRGQ 260
LQ+ R +A ++G+
Sbjct: 153 REAKAEMRRKAKELQQARRDAERQGK 178
>BC064936-1|AAH64936.1| 189|Homo sapiens ARCN1 protein protein.
Length = 189
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/59 (59%), Positives = 42/59 (71%)
Frame = +3
Query: 3 YCVQLTETEXXXXXXXXXXXXDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQ 179
YC L E E DEIVALGYRE+VNLAQ+R+F EMDSHEEK+++AVR+TQ
Sbjct: 93 YCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQ 151
>BC032828-1|AAH32828.1| 443|Homo sapiens SFRP4 protein protein.
Length = 443
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 199 ACANALRSCSVRDWRRPNVASRRAHRCPSAVALVARR 309
A A SC VRDW P + R R +A AL ARR
Sbjct: 2 AVAGCAPSCGVRDWSCPGGFAPRRLRAGAARALCARR 38
>M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth factor
receptor protein.
Length = 1106
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = -2
Query: 331 SDGDDEDIVELPKPLPKDICERG---GWPRLAASNLSRCN 221
++GD++ I+ LP P P ++ + G G P LA+S L+ N
Sbjct: 1015 NEGDNDYIIPLPDPKP-EVADEGPLEGSPSLASSTLNEVN 1053
>J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth factor
receptor protein.
Length = 1106
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = -2
Query: 331 SDGDDEDIVELPKPLPKDICERG---GWPRLAASNLSRCN 221
++GD++ I+ LP P P ++ + G G P LA+S L+ N
Sbjct: 1015 NEGDNDYIIPLPDPKP-EVADEGPLEGSPSLASSTLNEVN 1053
>BC032224-1|AAH32224.1| 1106|Homo sapiens platelet-derived growth
factor receptor, beta polypeptide protein.
Length = 1106
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = -2
Query: 331 SDGDDEDIVELPKPLPKDICERG---GWPRLAASNLSRCN 221
++GD++ I+ LP P P ++ + G G P LA+S L+ N
Sbjct: 1015 NEGDNDYIIPLPDPKP-EVADEGPLEGSPSLASSTLNEVN 1053
>AB209657-1|BAD92894.1| 777|Homo sapiens platelet-derived growth
factor receptor beta precursor variant protein.
Length = 777
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = -2
Query: 331 SDGDDEDIVELPKPLPKDICERG---GWPRLAASNLSRCN 221
++GD++ I+ LP P P ++ + G G P LA+S L+ N
Sbjct: 686 NEGDNDYIIPLPDPKP-EVADEGPLEGSPSLASSTLNEVN 724
>BC036022-1|AAH36022.1| 753|Homo sapiens transcription elongation
factor B polypeptide 3B (elongin A2) protein.
Length = 753
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -3
Query: 321 TTRTSSSYQSHCRRTSVSAAAGHVWPPPISHAATP*RVRACGSLPRVL-GSALRLDKSFP 145
T S S+ RRT+ G P P SH+ P R C PR+ + R S
Sbjct: 117 TAPRSPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKC---PRIAPADSGRYRASPT 173
Query: 144 RESPFQQTNGP 112
R +P + GP
Sbjct: 174 RTAPLRMPEGP 184
>BC103911-1|AAI03912.1| 753|Homo sapiens transcription elongation
factor B polypeptide 3B (elongin A2) protein.
Length = 753
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -3
Query: 321 TTRTSSSYQSHCRRTSVSAAAGHVWPPPISHAATP*RVRACGSLPRVL-GSALRLDKSFP 145
T S S+ RRT+ G P P SH+ P R C PR+ + R S
Sbjct: 117 TAPRSPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKC---PRIAPADSGRYRASPT 173
Query: 144 RESPFQQTNGP 112
R +P GP
Sbjct: 174 RTAPLPMPEGP 184
>AB030834-1|BAA90665.1| 753|Homo sapiens transcription factor
Elongin A2 protein.
Length = 753
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -3
Query: 321 TTRTSSSYQSHCRRTSVSAAAGHVWPPPISHAATP*RVRACGSLPRVL-GSALRLDKSFP 145
T S S+ RRT+ G P P SH+ P R C PR+ + R S
Sbjct: 117 TAPRSPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKC---PRIAPADSGRYRASPT 173
Query: 144 RESPFQQTNGP 112
R +P GP
Sbjct: 174 RTAPLPMPEGP 184
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,893,313
Number of Sequences: 237096
Number of extensions: 777515
Number of successful extensions: 1982
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1979
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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