Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b03
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...    71   2e-13
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    26   6.0  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    26   6.0  

>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 35/88 (39%), Positives = 46/88 (52%)
 Frame = +3

Query: 3   YCVQLTETEXXXXXXXXXXXXDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQX 182
           YC    E E            DE+V LGYRESVNLAQ+R+F EMDSHEE+++  +++ Q 
Sbjct: 99  YCRSNEEKEILAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQE 158

Query: 183 XXXXXXXXXXXXXLQRERLEAAKRGQPP 266
                        L+R + EA  RG  P
Sbjct: 159 KAAKQAMAEKAKELKRAQKEALSRGLKP 186


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 334 DSDGDDEDIVELPKPLP 284
           D++GDD DI +LP P P
Sbjct: 124 DTEGDDADIDDLPTPPP 140


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 49   ICYLLSTRLSLLGTEKASI*RRSVRLLKWTLTRKRFIKP 165
            IC LL   L   G  + ++   +V+   W L R  F KP
Sbjct: 1038 ICVLLLVPLMAFGVNRQALTEPNVKDWHWLLVRNIFYKP 1076


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
           protein Y43D4A.5 protein.
          Length = 1648

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 334 DSDGDDEDIVELPKPLPKDI 275
           D+DGDD+D+ E+    P+ I
Sbjct: 513 DADGDDDDVEEITATTPRGI 532


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 49  ICYLLSTRLSLLGTEKASI*RRSVRLLKWTLTRKRFIKP 165
           IC LL   L   G  + ++   +V+   W L R  F KP
Sbjct: 754 ICVLLLVPLMAFGVNRQALTEPNVKDWHWLLVRNIFYKP 792


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,794,454
Number of Sequences: 27780
Number of extensions: 119919
Number of successful extensions: 374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)