Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b03
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   7.1  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       20   9.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 241 RRPNVASRRAHRCPSAVALVAR 306
           R PN +   A +C S   + AR
Sbjct: 739 RSPNASPSPAEQCASTTTITAR 760


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 286 AVALVARRCPRR 321
           AV +  R+CPRR
Sbjct: 102 AVCVCMRKCPRR 113


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 80  SWVQRKRQ 103
           SW++RKRQ
Sbjct: 61  SWIKRKRQ 68


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 334 DSDGDDEDIVELPKPLPKD 278
           D D DD+D VE     P +
Sbjct: 396 DGDDDDDDDVEAANGKPAE 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,872
Number of Sequences: 438
Number of extensions: 1373
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)