Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b02
         (355 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.2  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   3.7  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   3.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    20   8.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   8.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 188 QSVKYRSVTKAAPPNPP 138
           +S+ Y S+   APP PP
Sbjct: 719 ESISYLSMENNAPPPPP 735


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 31  QFNSYGYQLKKYQELLK 81
           +F+  G   KKY ELLK
Sbjct: 104 KFDPQGEYKKKYDELLK 120


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 31  QFNSYGYQLKKYQELLK 81
           +F+  G   KKY ELLK
Sbjct: 104 KFDPQGEYKKKYDELLK 120


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 48  LPTKKVPRAIKNGSCGQE 101
           L +++VP+  KNG+ G +
Sbjct: 284 LVSQRVPQLAKNGAYGPD 301


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = -2

Query: 213 GYICDEYFPVREI 175
           G++C+ Y P+ ++
Sbjct: 168 GFLCNNYLPLPQV 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,305
Number of Sequences: 336
Number of extensions: 1568
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)