Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b02
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   1.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   2.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   2.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   2.6  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   3.4  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   4.5  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    24   7.9  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.9  

>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 160 KQHRRTLRLKTGMRWRFPNVSCPHEPFLIALGTFLVGNR 44
           K H     ++T +R+     S P  P  + LGT+ V NR
Sbjct: 235 KSHNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNR 273


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 83   WFVWARNIWKSPP 121
            W VWA  +W +PP
Sbjct: 1129 WEVWAPRVWSNPP 1141


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 176 YRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSS 69
           Y+SV  AAPP PP++ R     +  + P +  F +S
Sbjct: 116 YQSVPSAAPP-PPSQQRYMPDSAVAYNPNQDQFGNS 150


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 205 LRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHEPFLIALGTFL 56
           + ++L     + +L  +  R    K  +RWR+ +V C     +I    FL
Sbjct: 63  VHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFL 112


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 106 NVSCPHEPFLIALGTFLVGNRMN 38
           N+ CP  P++++  T++    MN
Sbjct: 82  NLGCPPPPYIVSANTYMAPKGMN 104


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 200 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYF 60
           TN+   +K  S TK+ P NP +E+ +   I + F  +  I  S + F
Sbjct: 60  TNSDNKIKKLSKTKSNPTNPKSEE-DPSQICQSFDESNIITPSKYLF 105


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 212 GIFATNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 93
           GIF +N  + ++  S  KA PP PP +     A S    P
Sbjct: 187 GIFPSNYVRLLE-DSAVKAQPPPPPPQQNYPPAASSSAPP 225


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 152 PPNPPAEDRNAVAIS 108
           PPNPPA + NA  ++
Sbjct: 277 PPNPPAANGNATPVT 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,206
Number of Sequences: 5004
Number of extensions: 25214
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)