Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3b02
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895... 31 0.34
01_07_0114 + 41161923-41163251 27 4.2
07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880 27 5.6
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 27 5.6
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 27 5.6
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 26 9.8
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 26 9.8
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 26 9.8
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574 26 9.8
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 26 9.8
>09_04_0746 -
19888479-19888622,19888739-19888867,19889061-19889548,
19889666-19889843,19889920-19889991,19890993-19891193
Length = 403
Score = 30.7 bits (66), Expect = 0.34
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 200 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 93
TN FQS + S T PP PP D + + +SK LP
Sbjct: 41 TNPFQSAAFSSTTTGDPP-PPTMD-SPIKVSKIILP 74
>01_07_0114 + 41161923-41163251
Length = 442
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 113 SPPHSCLQPEGSAVLLL*RSYISRTGKYSSQIYPITTESLRDS 241
+PP CL P L+L S + TG+ + P+ +RDS
Sbjct: 3 NPPIKCLLPPAIVSLVLLISCMVATGEQQAPYKPLVVPLVRDS 45
>07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880
Length = 366
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 161 KAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFS 54
+A PP+P E+ AV +L + ++W+ FS
Sbjct: 100 RALPPSPAMEEETAVRAQGVYLYDKKEAPNAWFAFS 135
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 212 PITTESLRDSKRRSEY 259
P++TESL+ SKRRS +
Sbjct: 455 PLSTESLKSSKRRSSF 470
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -3
Query: 188 QSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFSW*PYELNCL 27
++V + T + PP E++ + I F NSSW F S + +C+
Sbjct: 88 EAVPVPAQTSSLPPGVSREEQATIKIQTAFRGYLLSENSSWLFISSAAFIYHCV 141
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 170 SVTKAAPPNPPAEDRNAVAIS 108
+V PNPP+EDR A I+
Sbjct: 39 AVVARIQPNPPSEDRRAAVIA 59
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 184 DWKVFVANIPYYNGKFKGL 240
DW V +PY GK KGL
Sbjct: 668 DWGVQQDTVPYIQGKIKGL 686
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 212 GIFATNTFQSVKYRSVTKAAPPNPPAEDRNAVAIS 108
G+ T T Q ++ + + A P PP+E A A S
Sbjct: 890 GVSVTRTGQGMRRSASSPALAPPPPSESGTAAATS 924
>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
Length = 602
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +1
Query: 31 QFNSYGYQLKKYQE----LLKMVRVGKKHLEI 114
+FNS+ +QL +QE +L + V + HLE+
Sbjct: 332 EFNSFQFQLTSHQEEREAILAKIEVSQVHLEL 363
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +1
Query: 31 QFNSYGYQLKKYQE----LLKMVRVGKKHLEI 114
+FNS+ +QL +QE +L + V + HLE+
Sbjct: 272 EFNSFQFQLTSHQEERDAILAKIEVSQVHLEL 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,564,110
Number of Sequences: 37544
Number of extensions: 152938
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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