Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3b02
         (355 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.62 
SB_47560| Best HMM Match : CM_2 (HMM E-Value=0.82)                     27   3.3  
SB_28985| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  

>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 179 KYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFF 57
           +YR+VT+++   PP+  + A+ I   +L    +F+SS +FF
Sbjct: 128 RYRAVTRSSCAAPPSRRQIAITILISWLIPLLMFSSSLHFF 168


>SB_47560| Best HMM Match : CM_2 (HMM E-Value=0.82)
          Length = 384

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = -3

Query: 164 TKAAPPNPPAEDR----NAVAISKCFLPTRTIFNSSW 66
           +K  PP PP+ED     N    +    P + IF SSW
Sbjct: 243 SKTPPPPPPSEDEHEPDNISTDTFTITPEQAIFQSSW 279


>SB_28985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 62  STKSY*KWFVWARNIWKSPPHSCL 133
           STKSY KWF   ++ W   P + +
Sbjct: 44  STKSYKKWFAQVQSQWSQYPEAVI 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,135,944
Number of Sequences: 59808
Number of extensions: 176249
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)