Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3b02
(355 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 30 0.53
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 30 0.53
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 30 0.53
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 30 0.53
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 30 0.53
U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein. 28 2.2
U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3... 28 2.2
U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical pr... 27 3.8
U13645-8|AAM15544.1| 565|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z68336-6|CAE17801.1| 204|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical ... 26 8.7
AF251126-1|AAF71273.1| 487|Caenorhabditis elegans UDP-GlcNAc:a-... 26 8.7
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 223 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 86
R N +YLR++L + + +L RR++ + +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 223 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 86
R N +YLR++L + + +L RR++ + +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 223 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 86
R N +YLR++L + + +L RR++ + +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 223 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 86
R N +YLR++L + + +L RR++ + +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 223 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 86
R N +YLR++L + + +L RR++ + +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210
>U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein.
Length = 393
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 172 GALQKQHRRTLRLKTGMR-WRFPNVSCPHE 86
G LQ H++ L R WR+P++S PHE
Sbjct: 74 GRLQVSHKKGLPHVIYCRVWRWPDISSPHE 103
>U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3
protein.
Length = 393
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 172 GALQKQHRRTLRLKTGMR-WRFPNVSCPHE 86
G LQ H++ L R WR+P++S PHE
Sbjct: 74 GRLQVSHKKGLPHVIYCRVWRWPDISSPHE 103
>U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical
protein C05D10.4b protein.
Length = 597
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 188 QSVKYRSVTKAAPPNPPAEDRN 123
QS+ R+V APPNPP +++
Sbjct: 162 QSINSRAVPPPAPPNPPKMEKH 183
>U13645-8|AAM15544.1| 565|Caenorhabditis elegans Hypothetical
protein C05D10.4a protein.
Length = 565
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 188 QSVKYRSVTKAAPPNPPAEDRN 123
QS+ R+V APPNPP +++
Sbjct: 130 QSINSRAVPPPAPPNPPKMEKH 151
>Z68336-6|CAE17801.1| 204|Caenorhabditis elegans Hypothetical
protein F22B3.9 protein.
Length = 204
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -3
Query: 191 FQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWY 63
+ ++KY S PPN P+ R+ A+ + +P+ I ++
Sbjct: 129 WSTMKYSSDDNETPPNEPSPRRSKSALIQTLVPSDFILKKLYF 171
>Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical
protein C03E10.4 protein.
Length = 487
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 298 CVNCELVTM*LYLKSFKK 351
C NCE++++ YLKS K
Sbjct: 291 CENCEIISLGFYLKSTNK 308
>Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 197 NTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 93
N F+ +Y+ PP PP +N+ ++++ + P
Sbjct: 370 NYFEQARYQRPPVQMPPPPPPPQQNSPSVNENYHP 404
>AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 197 NTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 93
N F+ +Y+ PP PP +N+ ++++ + P
Sbjct: 370 NYFEQARYQRPPVQMPPPPPPPQQNSPSVNENYHP 404
>AF251126-1|AAF71273.1| 487|Caenorhabditis elegans
UDP-GlcNAc:a-6-D-mannoside
b1,2-N-acetylglucosaminyltransferase II protein.
Length = 487
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 298 CVNCELVTM*LYLKSFKK 351
C NCE++++ YLKS K
Sbjct: 291 CENCEIISLGFYLKSTNK 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,822
Number of Sequences: 27780
Number of extensions: 140457
Number of successful extensions: 321
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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