Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a22
         (768 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles g...   186   4e-46
UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba...    40   0.051
UniRef50_UPI0000499257 Cluster: hypothetical protein 384.t00006;...    37   0.48 
UniRef50_Q6VZV9 Cluster: CNPV038 vaccinia C4L/C10L-like protein;...    35   1.9  
UniRef50_A7MEH2 Cluster: Putative uncharacterized protein; n=3; ...    35   2.6  
UniRef50_UPI0000499D34 Cluster: reverse transcriptase; n=16; Ent...    34   3.4  
UniRef50_Q8IAW3 Cluster: Putative uncharacterized protein PF08_0...    34   3.4  
UniRef50_UPI00004995AF Cluster: hypothetical protein 59.t00002; ...    33   5.9  
UniRef50_A5W9C6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_Q7RYP7 Cluster: Putative uncharacterized protein NCU004...    33   5.9  
UniRef50_Q1HA67 Cluster: Putative uncharacterized protein ClaKEL...    33   5.9  

>UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles
            gambiae|Rep: Reverse transcriptase - Anopheles gambiae
            (African malaria mosquito)
          Length = 1209

 Score =  186 bits (454), Expect = 4e-46
 Identities = 93/243 (38%), Positives = 144/243 (59%), Gaps = 3/243 (1%)
 Frame = -3

Query: 721  LEIGFFGRLIKVLKSHLSGGNKIRAFNGWVMPMLTYSFGILRWTQSEXXXXXXXXXXXLT 542
            L+  F  R+  +LKS LS GNK++A N + + +LTYSFG+++W+ ++            T
Sbjct: 803  LQDKFLHRVSCILKSFLSVGNKVKAINTFAVALLTYSFGVMKWSNTDLEALERTIRVVST 862

Query: 541  AYRMHHPRSSVMRLYIPRKCGGRGILNAKDLHNREIYNLREYFLKMNVN--MYRDVVAVD 368
             ++M HP++SV R+ +PRK GG GI++ + L   +I+ LR YF++      +YR V   D
Sbjct: 863  KHQMRHPKASVERVILPRKIGGVGIIDIQALCISQIHQLRSYFVESQNRHELYRTVYKAD 922

Query: 367  KGLTPLSLANGNWK-RLKVESISDRITVWRSKELHGRFYRALTGPDVDQLASVAWLRFSN 191
             GL+ L LA  +++    ++++  +   W+ KELHG     L    +D+++S  WL   +
Sbjct: 923  HGLSALHLAQQDYQLNCNIKTVDGKGATWKQKELHGTHTHQLNLEHIDKVSSSTWLVRCD 982

Query: 190  LFGETEGFIFAIMDEVIMTNNYRKYILKDGTVDICRACHRPGESIRHIVSGCSRFANGEY 11
            LF ETEGF+ AI D VI T NYR+ IL++   D CR C+  GESI H+++GC   A   Y
Sbjct: 983  LFCETEGFMVAIQDRVIATWNYRRCILREDVEDRCRKCNSGGESIEHVIAGCPVLAGSAY 1042

Query: 10   LHR 2
            L R
Sbjct: 1043 LDR 1045


>UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba
           histolytica|Rep: Reverse transcriptase - Entamoeba
           histolytica
          Length = 801

 Score = 40.3 bits (90), Expect = 0.051
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -3

Query: 307 ISDR-ITVWRSKELHGRFYRALTGPDVDQLASVAWLRFSNLFGETEGFIFAIMDEVIMTN 131
           ++DR +  W+ K+  G + R   G   D+  +VA  R  ++       I  + + V MT 
Sbjct: 565 LNDRYLNEWKEKKC-GEYIRCANGTFNDKKLTVATWRSLDIKRNEFLQIVKMQEGVTMTG 623

Query: 130 NYRKYILKDGTVDICRACHRPGESIRHIVSGC 35
           N +  IL++  +  C+ C     SI HI+ GC
Sbjct: 624 NIKSKILQNDALKYCKHCPNTIASISHILLGC 655


>UniRef50_UPI0000499257 Cluster: hypothetical protein 384.t00006;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 384.t00006 - Entamoeba histolytica HM-1:IMSS
          Length = 283

 Score = 37.1 bits (82), Expect = 0.48
 Identities = 24/84 (28%), Positives = 38/84 (45%)
 Frame = -3

Query: 286 WRSKELHGRFYRALTGPDVDQLASVAWLRFSNLFGETEGFIFAIMDEVIMTNNYRKYILK 107
           W+ K+  G + R       D+  +VA  R  N+       I  + + V MT N +  IL+
Sbjct: 155 WKEKKC-GEYIRCANCTFNDKKLTVATWRSLNIKRNAFLQIVKMQEGVTMTGNIKSKILQ 213

Query: 106 DGTVDICRACHRPGESIRHIVSGC 35
           +  +  C+ C     SI HI+ GC
Sbjct: 214 NDALKYCKHCPNTIASIIHILLGC 237


>UniRef50_Q6VZV9 Cluster: CNPV038 vaccinia C4L/C10L-like protein;
           n=1; Canarypox virus|Rep: CNPV038 vaccinia C4L/C10L-like
           protein - Canarypox virus (CNPV)
          Length = 413

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
 Frame = +3

Query: 483 HFRGIY-NLITDERG*CILYAVNNRLTFLSSTSSSDCVHLS---MPKEYVNIGMTQP--- 641
           H   +Y  +IT+  G CIL   N  +      +      LS   +  EY+ I +  P   
Sbjct: 222 HSENLYAGIITNRSGKCILVHTNFEMDVYDDNTFDSLQELSIHVLNHEYITINLKYPGNI 281

Query: 642 ----LNARILFPPDKWLFKTFIRRPKKPISK 722
                N  +  P DK LFK  +  PKK  SK
Sbjct: 282 FWSNSNNDLFLPNDKELFKILVEAPKKENSK 312


>UniRef50_A7MEH2 Cluster: Putative uncharacterized protein; n=3;
           Enterobacteriaceae|Rep: Putative uncharacterized protein
           - Enterobacter sakazakii ATCC BAA-894
          Length = 562

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 352 LSLANGNWKRLKVESISDRITVWRSKELHGRFYRALTGP-DVDQLASVAWLRFSNLFGET 176
           L      W +   E ++  +  W +K+    F+  L G  DVDQ     WLRF+N  G T
Sbjct: 290 LKSQQNKWYQYVSEPVAGMVRSWLAKQDLMHFFELLRGNGDVDQARLFYWLRFANQMGFT 349


>UniRef50_UPI0000499D34 Cluster: reverse transcriptase; n=16;
           Entamoeba histolytica HM-1:IMSS|Rep: reverse
           transcriptase - Entamoeba histolytica HM-1:IMSS
          Length = 223

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 157 IMDEVIMTNNYRKYILKDGTVDICRACHRPGESIRHIVSGC 35
           + + V MT + +  IL++  +  C+ CH    SI HI+ GC
Sbjct: 1   MQEGVTMTGSIKSKILQNDDLKYCKHCHNTIASINHILLGC 41


>UniRef50_Q8IAW3 Cluster: Putative uncharacterized protein
           PF08_0084; n=3; Plasmodium|Rep: Putative uncharacterized
           protein PF08_0084 - Plasmodium falciparum (isolate 3D7)
          Length = 235

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = +1

Query: 301 LKYSLPSASSNSR*LRIAELAPYRLQRHPDTYSRSS*GNIP*GCISLGYVDPWHSKYHDP 480
           +KY+ P  S +S  +R +   PYRL  H + YSR+  G +P        V+P H+ YH  
Sbjct: 79  MKYN-PMKSYHSYSMRSSH--PYRLNIHNNKYSRA--GYVPPSHHKYS-VNPMHNNYHQA 132

Query: 481 HISEEYTTSL 510
           H +  Y  S+
Sbjct: 133 HNNYSYPNSI 142


>UniRef50_UPI00004995AF Cluster: hypothetical protein 59.t00002;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 59.t00002 - Entamoeba histolytica HM-1:IMSS
          Length = 328

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 166 IFAIMDEVIMTNNYRKYILKDGTVDICRACHRPGESIRHIVSGC 35
           I  + + V MT + +  IL++G +  C+ C     SI HI+ GC
Sbjct: 219 IVKMQEGVTMTGSIKSKILQNGDLKYCKHCPNTIASISHILLGC 262


>UniRef50_A5W9C6 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas putida F1|Rep: Putative uncharacterized
           protein - Pseudomonas putida F1
          Length = 541

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = -3

Query: 433 YNLREYFLKMNVNMYRDVVAVDKGLTPLSLANGNWKRLKVESISDRITVWRSKELHGRFY 254
           Y+L  Y  K + ++ + +   + G   +     +W +   + +   +  W +KE    F+
Sbjct: 262 YHLAAYREKPS-SLLKQLALDNWGSPQIRSRQNSWLQYVDKDVCAMVVAWFAKEDLEHFF 320

Query: 253 RALTGPD-VDQLASVAWLRFSNLFGET 176
             L G D VDQ     WLRF+N    T
Sbjct: 321 NLLKGDDDVDQSRLFYWLRFANQMSYT 347


>UniRef50_Q7RYP7 Cluster: Putative uncharacterized protein
           NCU00415.1; n=1; Neurospora crassa|Rep: Putative
           uncharacterized protein NCU00415.1 - Neurospora crassa
          Length = 1026

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 33/139 (23%), Positives = 54/139 (38%)
 Frame = +3

Query: 216 EANWSTSGPVRAR*NLPCNSLLLHTVMRSEILSTFSLFQFPLAKDSGVSPLSTATTSRYI 395
           EA W+T   +  +  L  N  ++HT+ R        + + P A     S     TTSRY 
Sbjct: 338 EAGWTTEKSLSCQFILLQNVRVIHTISRILHEEVQDILRRPAAPGDA-STKKADTTSRYT 396

Query: 396 FTFILRKYSLRLYISRLCRSLAFKIPRPPHFRGIYNLITDERG*CILYAVNNRLTFLSST 575
            TF      LR+Y++ LC      +    +   +Y  +    G  +         +LS T
Sbjct: 397 ATFQRTLPLLRVYMTWLCSYSKDIVEFQAYLEPLYGNMCKALGRALTVLFE---LWLSDT 453

Query: 576 SSSDCVHLSMPKEYVNIGM 632
           +    V    P++   IG+
Sbjct: 454 NLKSIVPYQFPEDEETIGI 472


>UniRef50_Q1HA67 Cluster: Putative uncharacterized protein ClaKEL1;
           n=5; Pezizomycotina|Rep: Putative uncharacterized
           protein ClaKEL1 - Glomerella lagenarium (Anthracnose
           fungus) (Colletotrichumlagenarium)
          Length = 555

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 227 PISFRSLVTIQ*PLWGN*RFYLCNY-GRSY-HDEQLPEIYTKGWDGRHLSGMPPSGRVY 57
           P++FR L      L G+  F +  + G  Y +D  L  + T  WD R + G+PPSGR Y
Sbjct: 452 PVTFRRLSHTA-TLVGSYLFVIGGHDGNEYSNDVLLLNLVTMTWDRRRVYGLPPSGRGY 509


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,554,613
Number of Sequences: 1657284
Number of extensions: 17751868
Number of successful extensions: 43970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 42332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43963
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)