Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a22
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.2  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   3.9  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   3.9  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    27   3.9  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    27   3.9  
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    25   9.0  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    25   9.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 646  FNGWVMPMLTYSFGILRWTQS 584
            ++ W++P+L   FG  RW Q+
Sbjct: 2246 YHSWILPILGLGFGAPRWLQT 2266


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 444 LCRSLAFKIPRPPHFRGIYNLITD 515
           LC   A  +PR P + G  N ITD
Sbjct: 488 LCNIFALPVPRTPFYAGFGNRITD 511


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = -1

Query: 63  SLLDILFLAVLGLLTASTCID 1
           ++ D+L+L++ GL ++STC++
Sbjct: 260 AVTDVLYLSIKGLFSSSTCLE 280


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 457 WHSKYHDPHISEEYTTSLQT 516
           +HSK  DPHI   Y T L T
Sbjct: 399 FHSKISDPHIGGTYMTILNT 418


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 74   VACPTNVDRPIL*YIFPVVVRHDNFVHNCKDKTFSFP 184
            V  P ++ R I  + FP VV+HD + +     + SFP
Sbjct: 980  VFVPLSLGRAIYAWCFPNVVKHDFYAYAIGFYSISFP 1016


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 361 LTPLSLANGNWKRLKVESISDRITVWRSKELHGRFYRALTGPDVDQLAS 215
           L P ++    + RL    +S R+   +   LH RF+ AL GP     AS
Sbjct: 232 LIPCAIDQDPYFRL-TRDVSGRLKFKKPALLHSRFFPALQGPQSKMSAS 279


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -2

Query: 695 YKGLKKPFIRRKQNPSV*WLGHAYVNIFLWHTKVDAIRAGRTGQKSQTIVNGIQNASSTF 516
           ++GLK   +   Q  S+  L    ++++  HT VDA   G     +Q I  G  N  S  
Sbjct: 76  FRGLKAITMEDPQQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLAQGIAGGRNNIKSVV 135

Query: 515 VC--NEVVYSSEMWG 477
               N V+  +E +G
Sbjct: 136 PTQQNSVMAEAEGYG 150


>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 532 MHHPRSSVMRLYIPRKCGGRG-ILNAKD 452
           M +    ++ LY+PRKC     I+ AKD
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKD 28


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 310 SISDRITVWRSKELHGRFYRALTGPDVDQLASVAWLRFSNLFGETE 173
           S+   I ++ S  LH ++ R ++ P   +  S+ W+R+S   G  E
Sbjct: 399 SLDFNILMFTSSGLHVQYLR-VSEPSNSKYKSIKWVRYSTRAGTCE 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,202
Number of Sequences: 5004
Number of extensions: 76735
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)