Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a22
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    37   0.020
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    28   7.1  
11_04_0459 - 17945840-17945971,17946042-17946351,17947379-179475...    28   7.1  
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305           28   7.1  
08_02_0140 + 13072140-13072309,13072526-13072793                       28   9.4  

>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 20/98 (20%), Positives = 50/98 (51%)
 Frame = -3

Query: 406 MNVNMYRDVVAVDKGLTPLSLANGNWKRLKVESISDRITVWRSKELHGRFYRALTGPDVD 227
           M ++M   + A+ KG++ + ++  +W  +K+ +  D +T +    L+ + +       +D
Sbjct: 366 MTIHMPAYLNALQKGVSTVMISYSSWNGIKMHANHDLVTRYLKDRLNFKGFTISDWEGID 425

Query: 226 QLASVAWLRFSNLFGETEGFIFAIMDEVIMTNNYRKYI 113
           ++ + A    SN     +  + A +D +++ NNY+ +I
Sbjct: 426 RITTPAG---SNYSYSVQAGVLAGIDMIMVPNNYQSFI 460


>12_02_0760 - 22888636-22889407,22889503-22889769,22890001-22890302,
            22890402-22890512,22890990-22891568,22892026-22892087,
            22892434-22892754,22893434-22893776
          Length = 918

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +1

Query: 250  PGRTYRVTPCSSIQLCDLKYSLPSASSNSR*LRIAELAPYRLQRHPDTYSRSS*GNIP*G 429
            PG  Y  T   S  + D +        N R + IAE+   R  + P+  +R   G +P  
Sbjct: 834  PGEEYMGTHAESAWMADREVRAAFGRFNERMMSIAEMIDCR-NKDPERKNRQGPGVVPYV 892

Query: 430  CISLGYVDP 456
             +   Y DP
Sbjct: 893  LLKPSYGDP 901


>11_04_0459 -
           17945840-17945971,17946042-17946351,17947379-17947514,
           17948123-17948253,17948337-17948710,17949194-17949246,
           17949973-17950288
          Length = 483

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 91  ICRACHRPGESIRHIVSGCS 32
           IC  C   GES  HI S CS
Sbjct: 56  ICHLCSNGGESCHHIFSSCS 75


>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
          Length = 611

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 265 GRFYRALTGPDVDQLAS 215
           GRF+ AL GP++DQL S
Sbjct: 203 GRFFAALEGPELDQLRS 219


>08_02_0140 + 13072140-13072309,13072526-13072793
          Length = 145

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 436 IYNLREYFLKMNVNMYRDVVAVDKGLTPLS 347
           +YN RE  + + V ++RDV     GL P S
Sbjct: 36  LYNCRELTIPLQVELHRDVPHSSSGLPPSS 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,074,792
Number of Sequences: 37544
Number of extensions: 487170
Number of successful extensions: 1179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)