Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a22
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    28   8.4  

>Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical
           protein K08E4.8 protein.
          Length = 310

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 262 RFYRALTGPDVDQLASVAWLRFSNLFGETEGFIFAIMDEVIMTNNY 125
           R +  L G  +D+   + WL F + F +    +F++  E I  NN+
Sbjct: 115 RNFELLKGLKIDEFIMIVWLNFISDFNQQAWKLFSVQSESISLNNF 160


>Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical
           protein C26C6.3 protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 349 SLANGNWKRLKVESISDRITVWRSKELHGRFYRALTGPDVDQLASVAWLRF 197
           +L+    KRL+   +SD+   W++  +  RF+ ++    + Q+  +A +RF
Sbjct: 115 ALSKDKTKRLRRSFVSDKTATWKTMPIKYRFHESIDFYTISQI--IAAIRF 163


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 190 LFGETEGFIFAIMDEVIMTNNYRKYILKDGTVDIC 86
           LF  +   +F +++  I T NY+KY  +  T+  C
Sbjct: 108 LFCASYSTVFMVLERTIATKNYKKYENRHKTLGYC 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,301
Number of Sequences: 27780
Number of extensions: 425349
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)