Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a19
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   118   5e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   116   1e-27
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   5.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.7  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  118 bits (283), Expect = 5e-28
 Identities = 51/83 (61%), Positives = 59/83 (71%)
 Frame = +1

Query: 112 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 291
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 292 XXMRHLKIVRRRFRNGFKEGKPT 360
             M +LK V R F+NGF+ GKPT
Sbjct: 62  GRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  116 bits (280), Expect = 1e-27
 Identities = 52/90 (57%), Positives = 60/90 (66%)
 Frame = +1

Query: 112 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 291
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 292 XXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 381
             M +LK V R F+NGF+ GKP     A A
Sbjct: 62  GRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 317 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 204
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 145 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 228
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 89  NNYFADKIRRVPQASVSAEIRPIRYAEDVVDRHITF 196
           N+ +  K+  +PQ S+ +      Y ED++D +++F
Sbjct: 695 NSQYLQKVG-IPQGSILSSFLCHFYMEDLIDEYLSF 729


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 429 LVFLIFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 322
           L+  IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 13  LLPFIFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,529
Number of Sequences: 5004
Number of extensions: 32476
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)