Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a18
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   4.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   6.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 737 CSCQGVDPKIQNAKAYAACQCCKT-----YCMDGL**TFDKHPVL 618
           C+C     +I+  + Y   QCCK      Y M+G     D+ P+L
Sbjct: 777 CTCDAKYLEIKCKRIYNEKQCCKNCARVDYSMNGTYSADDEVPML 821


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 515 YLCILRCGYWSSISCSKLYKSVS*STI*CPNVEDKEQGACQRFIRARPCNR 667
           + CI RC  +  +S SK+++ +  S + C    ++E        +A+P  R
Sbjct: 63  FACIGRCASYIQVSGSKIWQ-MERSCMCCQESGEREASVSLFCPKAKPGER 112


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 318 LKTQTTATVKNKVTQDTR 371
           L+ +    +KNKVT DTR
Sbjct: 400 LEIEDWVLLKNKVTSDTR 417


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 543 GLVSAAANSINQYHEV 590
           G+VSAA N +  YH +
Sbjct: 13  GIVSAATNKVVCYHGI 28


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 492 LVRILP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 376
           L R  P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 248 LNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 286


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 492 LVRILP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 376
           L R  P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 196 LNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 234


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 492 LVRILP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 376
           L R  P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 379 LNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 417


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,336
Number of Sequences: 336
Number of extensions: 4177
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)