Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3a18
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 80 3e-16
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 29 0.92
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 29 0.92
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.6
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 28 1.6
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 27 3.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 6.5
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 6.5
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 8.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.6
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 80.2 bits (189), Expect = 3e-16
Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +3
Query: 426 LMLSKSRLTSLVVLTSMAGYALAPAP-FQLTTFAFCAVGTGLVSAAANSINQYHEVPFDA 602
L L K RLT LVVL++M+ YALAP P T A+ +GT L S +AN+ NQ E D
Sbjct: 88 LELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDC 147
Query: 603 QMSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGVLYFGVNP 725
QM+RT++R + +G + P +A FA LT G + F VNP
Sbjct: 148 QMARTRSRPIPRGAIRPEYAWLFATLTGIAGTS-MSFLVNP 187
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.92
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 463 TTNDVNRDLDSIKQYCPVLLFLSY 392
+T +NR+L+ IK+YC V+ L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.92
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 463 TTNDVNRDLDSIKQYCPVLLFLSY 392
+T +NR+L+ IK+YC V+ L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 174 KVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLARISTAQNWRSKVPLKT 326
K+ C K+ +G+ KPVLF + + I TAQ W K+ L +
Sbjct: 535 KLKDCIFLFKNTLLGI--KPVLFGLKQRNIPLANGSIFTAQEWSEKLHLSS 583
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 383 FLPYSGVLGDFILYRCSCLSF 321
F P SG+ G F++Y C+ L F
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMF 175
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 597 DAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVGL 698
DA R+L G+++P+ A+ AAL S+ L
Sbjct: 130 DANTVPAIERILTTGIVDPISAVASAALVSAYHL 163
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 739 SAAVKGLTPKYKTPRPTLLVNAAKPIAWTGSNKPLTSTLFFVLDIWAS 596
SA + P +T V++A+P+A+ KP+ L + L++ A+
Sbjct: 360 SAPTRPTPPTVQTSSSAAPVDSAEPVAYQPIKKPIDPMLGYPLNVAAT 407
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 150 INLIMSYLKVIHCTLCLKHGYVGVYS-----KPVLFKITNNTLFQHLARISTAQ 296
IN + ++ ++ C++CL YVG +S +L +T TL + +TAQ
Sbjct: 324 INSVKTFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATTLIIFILYFATAQ 377
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 460 TNDVNRDLDSIKQYCPVLLFLSYD---GVSFHTLVS 362
T D DLD+ + Y P+ + +Y G+SF ++ S
Sbjct: 390 TKDATFDLDAYQNYSPIFMSTTYALAFGLSFASITS 425
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 270 HLARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETPSYDRKSNT 413
H+ IS + + P T T+ + NKV+ T+ + T SY +NT
Sbjct: 729 HINVISPGPSLQVNAPY-TPTSGELGNKVSNPTKEFVSTSSYAPAANT 775
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,862
Number of Sequences: 5004
Number of extensions: 67405
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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